Hb_000421_070

Information

Type -
Description -
Location Contig421: 57748-62141
Sequence    

Annotation

kegg
ID rcu:RCOM_0624690
description WD-repeat protein, putative
nr
ID XP_002532257.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q6NRH1
description DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1
trembl
ID B9T1Y8
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0624690 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ddb1- and cul4-associated factor 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41603: 57806-60476
cDNA
(Sanger)
(ID:Location)		 045_P05.ab1: 58888-60476

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_070 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_002603_120 0.0720113347 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
3 Hb_005188_050 0.073418732 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000663_040 0.0769940349 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
5 Hb_001677_210 0.0774649021 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
6 Hb_004931_070 0.077623892 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
7 Hb_004491_010 0.0807190234 - - 60S ribosomal protein L51, putative [Ricinus communis]
8 Hb_005245_130 0.0851494733 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
9 Hb_000041_270 0.0854913882 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
10 Hb_000034_100 0.0880058198 - - dnajc14 protein, putative [Ricinus communis]
11 Hb_001486_340 0.0881649996 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
12 Hb_003849_060 0.0890798387 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
13 Hb_012389_020 0.0901576334 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
14 Hb_002192_080 0.090264949 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
15 Hb_142439_010 0.0906321739 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
16 Hb_001117_100 0.0911718737 - - 40S ribosomal protein S16A [Hevea brasiliensis]
17 Hb_000487_290 0.0930115462 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
18 Hb_005276_210 0.0935391279 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
19 Hb_000621_080 0.0938378316 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005694_110 0.0939147344 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]

Gene co-expression network

sample Hb_000421_070 Hb_000421_070 Hb_002603_120 Hb_002603_120 Hb_000421_070--Hb_002603_120 Hb_005188_050 Hb_005188_050 Hb_000421_070--Hb_005188_050 Hb_000663_040 Hb_000663_040 Hb_000421_070--Hb_000663_040 Hb_001677_210 Hb_001677_210 Hb_000421_070--Hb_001677_210 Hb_004931_070 Hb_004931_070 Hb_000421_070--Hb_004931_070 Hb_004491_010 Hb_004491_010 Hb_000421_070--Hb_004491_010 Hb_000853_420 Hb_000853_420 Hb_002603_120--Hb_000853_420 Hb_001595_030 Hb_001595_030 Hb_002603_120--Hb_001595_030 Hb_000030_300 Hb_000030_300 Hb_002603_120--Hb_000030_300 Hb_000629_010 Hb_000629_010 Hb_002603_120--Hb_000629_010 Hb_002603_120--Hb_005188_050 Hb_002603_120--Hb_004491_010 Hb_000827_070 Hb_000827_070 Hb_005188_050--Hb_000827_070 Hb_000487_290 Hb_000487_290 Hb_005188_050--Hb_000487_290 Hb_000803_190 Hb_000803_190 Hb_005188_050--Hb_000803_190 Hb_045793_010 Hb_045793_010 Hb_005188_050--Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_005188_050--Hb_000025_360 Hb_000244_300 Hb_000244_300 Hb_000663_040--Hb_000244_300 Hb_001117_100 Hb_001117_100 Hb_000663_040--Hb_001117_100 Hb_005332_070 Hb_005332_070 Hb_000663_040--Hb_005332_070 Hb_000465_470 Hb_000465_470 Hb_000663_040--Hb_000465_470 Hb_011609_100 Hb_011609_100 Hb_000663_040--Hb_011609_100 Hb_000808_270 Hb_000808_270 Hb_001677_210--Hb_000808_270 Hb_003766_040 Hb_003766_040 Hb_001677_210--Hb_003766_040 Hb_001677_210--Hb_000629_010 Hb_006185_050 Hb_006185_050 Hb_001677_210--Hb_006185_050 Hb_008803_090 Hb_008803_090 Hb_001677_210--Hb_008803_090 Hb_000926_280 Hb_000926_280 Hb_001677_210--Hb_000926_280 Hb_000465_460 Hb_000465_460 Hb_004931_070--Hb_000465_460 Hb_003125_200 Hb_003125_200 Hb_004931_070--Hb_003125_200 Hb_012389_020 Hb_012389_020 Hb_004931_070--Hb_012389_020 Hb_000317_240 Hb_000317_240 Hb_004931_070--Hb_000317_240 Hb_002530_030 Hb_002530_030 Hb_004931_070--Hb_002530_030 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_004491_010--Hb_000853_420 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3159 19.6233 14.2263 6.31241 25.8464 27.3193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0544 24.8801 16.2161 16.6649 5.5133

CAGE analysis