Hb_000663_040

Information

Type -
Description -
Location Contig663: 52999-56833
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09640g
description hypothetical protein
nr
ID XP_012093062.1
description PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16275 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105650729 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53093: 52981-56921
cDNA
(Sanger)
(ID:Location)		 049_P03.ab1: 52985-56793

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000663_040 0.0 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
2 Hb_000244_300 0.0649738401 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
3 Hb_000421_070 0.0769940349 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_001117_100 0.0823154655 - - 40S ribosomal protein S16A [Hevea brasiliensis]
5 Hb_005332_070 0.0823583112 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
6 Hb_000465_470 0.0845446668 - - unknown [Picea sitchensis]
7 Hb_011609_100 0.0876006901 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
8 Hb_002192_080 0.0882289385 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
9 Hb_000275_170 0.08970595 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
10 Hb_006185_050 0.0899617683 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
11 Hb_007164_020 0.0906275171 - - hypothetical protein glysoja_025872 [Glycine soja]
12 Hb_000140_080 0.0932255073 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
13 Hb_054865_090 0.0932287028 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
14 Hb_000394_190 0.0937090214 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
15 Hb_001898_230 0.0941272311 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
16 Hb_001369_220 0.0951348588 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
17 Hb_002918_210 0.0964328811 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
18 Hb_004931_070 0.099221877 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
19 Hb_003849_060 0.09999906 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
20 Hb_005188_050 0.101592393 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000663_040 Hb_000663_040 Hb_000244_300 Hb_000244_300 Hb_000663_040--Hb_000244_300 Hb_000421_070 Hb_000421_070 Hb_000663_040--Hb_000421_070 Hb_001117_100 Hb_001117_100 Hb_000663_040--Hb_001117_100 Hb_005332_070 Hb_005332_070 Hb_000663_040--Hb_005332_070 Hb_000465_470 Hb_000465_470 Hb_000663_040--Hb_000465_470 Hb_011609_100 Hb_011609_100 Hb_000663_040--Hb_011609_100 Hb_000394_190 Hb_000394_190 Hb_000244_300--Hb_000394_190 Hb_000359_330 Hb_000359_330 Hb_000244_300--Hb_000359_330 Hb_011848_010 Hb_011848_010 Hb_000244_300--Hb_011848_010 Hb_000140_080 Hb_000140_080 Hb_000244_300--Hb_000140_080 Hb_003849_060 Hb_003849_060 Hb_000244_300--Hb_003849_060 Hb_002603_120 Hb_002603_120 Hb_000421_070--Hb_002603_120 Hb_005188_050 Hb_005188_050 Hb_000421_070--Hb_005188_050 Hb_001677_210 Hb_001677_210 Hb_000421_070--Hb_001677_210 Hb_004931_070 Hb_004931_070 Hb_000421_070--Hb_004931_070 Hb_004491_010 Hb_004491_010 Hb_000421_070--Hb_004491_010 Hb_011571_020 Hb_011571_020 Hb_001117_100--Hb_011571_020 Hb_001117_100--Hb_005332_070 Hb_001117_100--Hb_000421_070 Hb_000019_210 Hb_000019_210 Hb_001117_100--Hb_000019_210 Hb_005993_040 Hb_005993_040 Hb_001117_100--Hb_005993_040 Hb_005332_070--Hb_011571_020 Hb_000473_040 Hb_000473_040 Hb_005332_070--Hb_000473_040 Hb_000089_220 Hb_000089_220 Hb_005332_070--Hb_000089_220 Hb_011360_140 Hb_011360_140 Hb_005332_070--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_005332_070--Hb_012762_050 Hb_003001_140 Hb_003001_140 Hb_005332_070--Hb_003001_140 Hb_001541_260 Hb_001541_260 Hb_000465_470--Hb_001541_260 Hb_106552_050 Hb_106552_050 Hb_000465_470--Hb_106552_050 Hb_000236_100 Hb_000236_100 Hb_000465_470--Hb_000236_100 Hb_002301_220 Hb_002301_220 Hb_000465_470--Hb_002301_220 Hb_000032_490 Hb_000032_490 Hb_000465_470--Hb_000032_490 Hb_003992_240 Hb_003992_240 Hb_011609_100--Hb_003992_240 Hb_005322_040 Hb_005322_040 Hb_011609_100--Hb_005322_040 Hb_003125_200 Hb_003125_200 Hb_011609_100--Hb_003125_200 Hb_047503_010 Hb_047503_010 Hb_011609_100--Hb_047503_010 Hb_000959_210 Hb_000959_210 Hb_011609_100--Hb_000959_210 Hb_002346_020 Hb_002346_020 Hb_011609_100--Hb_002346_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.8935 42.4436 29.8685 14.2228 57.758 56.3733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9651 63.1317 36.3361 26.4025 10.712

CAGE analysis