Hb_000140_080

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig140: 70330-75497
Sequence    

Annotation

kegg
ID tcc:TCM_005269
description Homeodomain-like superfamily protein
nr
ID XP_012083312.1
description PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
swissprot
ID Q6R0H0
description Protein REVEILLE 3 OS=Arabidopsis thaliana GN=RVE3 PE=2 SV=1
trembl
ID A0A067K0G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14339 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeodomain-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10820: 70338-75446 , PASA_asmbl_10821: 71625-72033 , PASA_asmbl_10822: 71625-72549
cDNA
(Sanger)
(ID:Location)		 024_P09.ab1: 73199-75446

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_080 0.0 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
2 Hb_000224_060 0.0632589004 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
3 Hb_033095_020 0.0679871426 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011386_040 0.0730805246 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
5 Hb_000261_220 0.0741445917 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
6 Hb_031527_020 0.075486953 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
7 Hb_000152_340 0.0759414598 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
8 Hb_008511_030 0.0773447518 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
9 Hb_002025_110 0.0803917196 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
10 Hb_000359_330 0.0819233777 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000394_190 0.0820791273 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_000406_240 0.082497838 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
13 Hb_002783_310 0.0832397732 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
14 Hb_001541_260 0.0838260312 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
15 Hb_000771_180 0.084431807 - - polypyrimidine tract binding protein, putative [Ricinus communis]
16 Hb_111198_010 0.0847083854 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
17 Hb_000291_190 0.0848889899 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
18 Hb_005489_080 0.0852907821 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003878_140 0.0861671329 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
20 Hb_003126_030 0.0862752769 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000140_080 Hb_000140_080 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_033095_020 Hb_033095_020 Hb_000140_080--Hb_033095_020 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000261_220 Hb_000261_220 Hb_000140_080--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000140_080--Hb_031527_020 Hb_000152_340 Hb_000152_340 Hb_000140_080--Hb_000152_340 Hb_003878_140 Hb_003878_140 Hb_000224_060--Hb_003878_140 Hb_000291_190 Hb_000291_190 Hb_000224_060--Hb_000291_190 Hb_000865_080 Hb_000865_080 Hb_000224_060--Hb_000865_080 Hb_000025_360 Hb_000025_360 Hb_000224_060--Hb_000025_360 Hb_001616_050 Hb_001616_050 Hb_000224_060--Hb_001616_050 Hb_000394_190 Hb_000394_190 Hb_033095_020--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_002025_110 Hb_002025_110 Hb_033095_020--Hb_002025_110 Hb_012799_110 Hb_012799_110 Hb_033095_020--Hb_012799_110 Hb_050847_020 Hb_050847_020 Hb_011386_040--Hb_050847_020 Hb_032202_110 Hb_032202_110 Hb_011386_040--Hb_032202_110 Hb_000771_180 Hb_000771_180 Hb_011386_040--Hb_000771_180 Hb_002045_150 Hb_002045_150 Hb_011386_040--Hb_002045_150 Hb_000136_090 Hb_000136_090 Hb_011386_040--Hb_000136_090 Hb_001083_050 Hb_001083_050 Hb_000261_220--Hb_001083_050 Hb_000261_220--Hb_002025_110 Hb_000457_050 Hb_000457_050 Hb_000261_220--Hb_000457_050 Hb_005489_080 Hb_005489_080 Hb_000261_220--Hb_005489_080 Hb_000261_220--Hb_031527_020 Hb_031527_020--Hb_005489_080 Hb_003785_040 Hb_003785_040 Hb_031527_020--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000953_030 Hb_000953_030 Hb_000152_340--Hb_000953_030 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.0064 46.6852 24.1746 14.2794 53.1545 41.8737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6086 32.813 21.7987 19.1347 9.5161

CAGE analysis