Hb_000953_030

Information

Type transcription factor
Description TF Family: HSF
Location Contig953: 45856-50447
Sequence    

Annotation

kegg
ID rcu:RCOM_0383000
description DNA binding protein, putative
nr
ID XP_002528587.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GYY1
description Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2
trembl
ID B9SRG8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0383000 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63450: 45973-48679 , PASA_asmbl_63451: 45973-48679 , PASA_asmbl_63452: 48427-50142 , PASA_asmbl_63453: 46314-47700 , PASA_asmbl_63454: 49593-49903 , PASA_asmbl_63456: 47321-47651
cDNA
(Sanger)
(ID:Location)		 001_P07.ab1: 45973-46906 , 028_C11.ab1: 45973-46698 , 028_O21.ab1: 45973-46880 , 035_N10.ab1: 45973-46718

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_030 0.0 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
2 Hb_000152_340 0.0742926018 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
3 Hb_001946_300 0.078653503 - - PREDICTED: F-box protein At-B [Jatropha curcas]
4 Hb_005539_190 0.0811215787 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
5 Hb_004635_050 0.0824156836 - - nucleolar phosphoprotein, putative [Ricinus communis]
6 Hb_102129_070 0.0847117661 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
7 Hb_002326_020 0.0862157253 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
8 Hb_001616_050 0.0890082513 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
9 Hb_000331_160 0.0891674985 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
10 Hb_003540_160 0.0898075124 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
11 Hb_032202_240 0.0899943553 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
12 Hb_009178_020 0.0903968988 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
13 Hb_001946_240 0.0904160199 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
14 Hb_001902_060 0.0917361759 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
15 Hb_004017_040 0.0918081975 - - kinetochore protein nuf2, putative [Ricinus communis]
16 Hb_005188_060 0.0944283719 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
17 Hb_000313_340 0.0944570471 - - DNA repair protein xp-E, putative [Ricinus communis]
18 Hb_000283_130 0.0946995372 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
19 Hb_002659_060 0.0953126673 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
20 Hb_000504_160 0.0960515866 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]

Gene co-expression network

sample Hb_000953_030 Hb_000953_030 Hb_000152_340 Hb_000152_340 Hb_000953_030--Hb_000152_340 Hb_001946_300 Hb_001946_300 Hb_000953_030--Hb_001946_300 Hb_005539_190 Hb_005539_190 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_102129_070 Hb_102129_070 Hb_000953_030--Hb_102129_070 Hb_002326_020 Hb_002326_020 Hb_000953_030--Hb_002326_020 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_005539_190--Hb_140049_020 Hb_003040_020 Hb_003040_020 Hb_005539_190--Hb_003040_020 Hb_003540_160 Hb_003540_160 Hb_005539_190--Hb_003540_160 Hb_005539_190--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_005539_190--Hb_019153_020 Hb_140049_030 Hb_140049_030 Hb_005539_190--Hb_140049_030 Hb_007943_120 Hb_007943_120 Hb_004635_050--Hb_007943_120 Hb_007558_120 Hb_007558_120 Hb_004635_050--Hb_007558_120 Hb_033883_060 Hb_033883_060 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_005883_010 Hb_005883_010 Hb_004635_050--Hb_005883_010 Hb_004635_050--Hb_019153_020 Hb_003126_030 Hb_003126_030 Hb_102129_070--Hb_003126_030 Hb_008554_120 Hb_008554_120 Hb_102129_070--Hb_008554_120 Hb_000820_120 Hb_000820_120 Hb_102129_070--Hb_000820_120 Hb_102129_070--Hb_005539_190 Hb_001083_030 Hb_001083_030 Hb_102129_070--Hb_001083_030 Hb_000258_120 Hb_000258_120 Hb_002326_020--Hb_000258_120 Hb_003680_230 Hb_003680_230 Hb_002326_020--Hb_003680_230 Hb_000331_160 Hb_000331_160 Hb_002326_020--Hb_000331_160 Hb_009252_100 Hb_009252_100 Hb_002326_020--Hb_009252_100 Hb_006816_050 Hb_006816_050 Hb_002326_020--Hb_006816_050 Hb_002326_020--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.444 22.101 10.3698 6.67073 28.6916 16.8341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.53516 6.4175 6.94383 7.53551 3.53529

CAGE analysis