Hb_001083_030

Information

Type -
Description -
Location Contig1083: 44442-50166
Sequence    

Annotation

kegg
ID vvi:100243896
description guanine nucleotide-binding protein subunit beta-2-like 1
nr
ID XP_012083008.1
description PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
swissprot
ID Q91WQ5
description TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1
trembl
ID A0A067LL59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09729 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable e3 ubiquitin ligase complex scf subunit sconb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02529: 45477-48547 , PASA_asmbl_02530: 45512-47659 , PASA_asmbl_02531: 45743-45959 , PASA_asmbl_02532: 49630-50194 , PASA_asmbl_02533: 49630-50194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001083_030 0.0 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
2 Hb_025669_020 0.0794644921 - - conserved hypothetical protein [Ricinus communis]
3 Hb_102129_070 0.0834655913 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
4 Hb_000946_120 0.0862204687 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000032_490 0.0879059613 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
6 Hb_000365_140 0.0913846053 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
7 Hb_000107_530 0.0999105072 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_009557_040 0.1001411259 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
9 Hb_000832_090 0.1003771705 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
10 Hb_012132_030 0.1009110917 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
11 Hb_001541_260 0.1022977404 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
12 Hb_002499_070 0.1045153924 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
13 Hb_160233_010 0.1062344009 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
14 Hb_002351_020 0.1093395159 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
15 Hb_009558_040 0.1097044772 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
16 Hb_004656_060 0.1101836282 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
17 Hb_000406_040 0.1105340997 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
18 Hb_002221_050 0.1115044865 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
19 Hb_000465_470 0.1115742297 - - unknown [Picea sitchensis]
20 Hb_000320_380 0.113370547 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001083_030 Hb_001083_030 Hb_025669_020 Hb_025669_020 Hb_001083_030--Hb_025669_020 Hb_102129_070 Hb_102129_070 Hb_001083_030--Hb_102129_070 Hb_000946_120 Hb_000946_120 Hb_001083_030--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_001083_030--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_001083_030--Hb_000365_140 Hb_000107_530 Hb_000107_530 Hb_001083_030--Hb_000107_530 Hb_003018_060 Hb_003018_060 Hb_025669_020--Hb_003018_060 Hb_000640_220 Hb_000640_220 Hb_025669_020--Hb_000640_220 Hb_025669_020--Hb_000365_140 Hb_025669_020--Hb_000032_490 Hb_000832_090 Hb_000832_090 Hb_025669_020--Hb_000832_090 Hb_003126_030 Hb_003126_030 Hb_102129_070--Hb_003126_030 Hb_008554_120 Hb_008554_120 Hb_102129_070--Hb_008554_120 Hb_000820_120 Hb_000820_120 Hb_102129_070--Hb_000820_120 Hb_005539_190 Hb_005539_190 Hb_102129_070--Hb_005539_190 Hb_000953_030 Hb_000953_030 Hb_102129_070--Hb_000953_030 Hb_012132_030 Hb_012132_030 Hb_000946_120--Hb_012132_030 Hb_144787_030 Hb_144787_030 Hb_000946_120--Hb_144787_030 Hb_000946_120--Hb_000032_490 Hb_000946_120--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_000946_120--Hb_000422_140 Hb_001541_260 Hb_001541_260 Hb_000946_120--Hb_001541_260 Hb_002351_020 Hb_002351_020 Hb_000032_490--Hb_002351_020 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000032_490--Hb_000832_090 Hb_000032_490--Hb_001541_260 Hb_000032_490--Hb_000365_140 Hb_002477_130 Hb_002477_130 Hb_000365_140--Hb_002477_130 Hb_000365_140--Hb_000422_140 Hb_000365_140--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000365_140--Hb_005895_040 Hb_000313_340 Hb_000313_340 Hb_000107_530--Hb_000313_340 Hb_007885_070 Hb_007885_070 Hb_000107_530--Hb_007885_070 Hb_000320_380 Hb_000320_380 Hb_000107_530--Hb_000320_380 Hb_000417_160 Hb_000417_160 Hb_000107_530--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_000107_530--Hb_002221_050 Hb_015026_050 Hb_015026_050 Hb_000107_530--Hb_015026_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.08575 5.70267 4.41844 1.83854 12.1812 5.48429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70842 3.08059 4.91229 2.79895 2.03751

CAGE analysis