Hb_003126_030

Information

Type -
Description -
Location Contig3126: 19285-21069
Sequence    

Annotation

kegg
ID rcu:RCOM_0573120
description hypothetical protein
nr
ID XP_002529652.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9SUI3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0573120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33082: 19426-19896 , PASA_asmbl_33083: 20154-20661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_102129_070 0.0733633238 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
3 Hb_000140_080 0.0862752769 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
4 Hb_008554_120 0.0886827824 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
5 Hb_000152_340 0.0895636222 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
6 Hb_000406_240 0.0897911809 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
7 Hb_000169_130 0.0908506486 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
8 Hb_001616_050 0.091688479 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
9 Hb_000820_120 0.0929157698 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
10 Hb_003878_140 0.0934725164 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
11 Hb_000224_060 0.0942526618 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
12 Hb_000336_140 0.0946555608 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000953_030 0.0971067806 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
14 Hb_045046_010 0.097248391 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
15 Hb_010738_010 0.0987963384 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_065525_060 0.0989360163 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001486_080 0.0991174009 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
18 Hb_140049_030 0.101602735 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
19 Hb_002301_220 0.1020508234 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
20 Hb_009178_020 0.1027698685 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]

Gene co-expression network

sample Hb_003126_030 Hb_003126_030 Hb_102129_070 Hb_102129_070 Hb_003126_030--Hb_102129_070 Hb_000140_080 Hb_000140_080 Hb_003126_030--Hb_000140_080 Hb_008554_120 Hb_008554_120 Hb_003126_030--Hb_008554_120 Hb_000152_340 Hb_000152_340 Hb_003126_030--Hb_000152_340 Hb_000406_240 Hb_000406_240 Hb_003126_030--Hb_000406_240 Hb_000169_130 Hb_000169_130 Hb_003126_030--Hb_000169_130 Hb_102129_070--Hb_008554_120 Hb_000820_120 Hb_000820_120 Hb_102129_070--Hb_000820_120 Hb_005539_190 Hb_005539_190 Hb_102129_070--Hb_005539_190 Hb_001083_030 Hb_001083_030 Hb_102129_070--Hb_001083_030 Hb_000953_030 Hb_000953_030 Hb_102129_070--Hb_000953_030 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_033095_020 Hb_033095_020 Hb_000140_080--Hb_033095_020 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000261_220 Hb_000261_220 Hb_000140_080--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000140_080--Hb_031527_020 Hb_000140_080--Hb_000152_340 Hb_002301_220 Hb_002301_220 Hb_008554_120--Hb_002301_220 Hb_007982_070 Hb_007982_070 Hb_008554_120--Hb_007982_070 Hb_140049_030 Hb_140049_030 Hb_008554_120--Hb_140049_030 Hb_007229_040 Hb_007229_040 Hb_008554_120--Hb_007229_040 Hb_000771_180 Hb_000771_180 Hb_008554_120--Hb_000771_180 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000152_340--Hb_000953_030 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090 Hb_000406_240--Hb_007982_070 Hb_017075_030 Hb_017075_030 Hb_000406_240--Hb_017075_030 Hb_001486_080 Hb_001486_080 Hb_000406_240--Hb_001486_080 Hb_005883_010 Hb_005883_010 Hb_000406_240--Hb_005883_010 Hb_000140_330 Hb_000140_330 Hb_000406_240--Hb_000140_330 Hb_004635_050 Hb_004635_050 Hb_000406_240--Hb_004635_050 Hb_004480_040 Hb_004480_040 Hb_000169_130--Hb_004480_040 Hb_010738_010 Hb_010738_010 Hb_000169_130--Hb_010738_010 Hb_003785_040 Hb_003785_040 Hb_000169_130--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000169_130--Hb_000441_070 Hb_065525_060 Hb_065525_060 Hb_000169_130--Hb_065525_060 Hb_003633_070 Hb_003633_070 Hb_000169_130--Hb_003633_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.734757 0.665052 0.279527 0.120153 0.6994 0.401413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.248622 0.282545 0.327935 0.259906 0.136982

CAGE analysis