Hb_008554_120

Information

Type -
Description -
Location Contig8554: 70733-73244
Sequence    

Annotation

kegg
ID egr:104425826
description guanine nucleotide-binding protein subunit beta-like protein
nr
ID XP_012072542.1
description PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
swissprot
ID Q39836
description Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1
trembl
ID A0A067KNU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05340 PE=4 SV=1
Gene Ontology
ID GO:0005515
description guanine nucleotide-binding protein subunit beta-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60547: 70879-73205
cDNA
(Sanger)
(ID:Location)		 011_P19.ab1: 70882-71580 , 027_D06.ab1: 70901-71295 , 030_F11.ab1: 70882-71599 , 045_G11.ab1: 70882-71556 , 048_M13.ab1: 70882-71612 , 048_O12.ab1: 70882-71662 , 050_M05.ab1: 70882-71576

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008554_120 0.0 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
2 Hb_002301_220 0.0720951387 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
3 Hb_102129_070 0.0750216341 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
4 Hb_007982_070 0.0756075946 - - PREDICTED: protein CPR-5 [Jatropha curcas]
5 Hb_140049_030 0.077203757 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
6 Hb_007229_040 0.0781241567 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
7 Hb_000771_180 0.0801811856 - - polypyrimidine tract binding protein, putative [Ricinus communis]
8 Hb_140049_020 0.0812471383 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
9 Hb_032202_110 0.0817164198 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_000406_240 0.0827957725 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
11 Hb_000300_360 0.0837191747 - - PREDICTED: exosome component 10 [Jatropha curcas]
12 Hb_001486_080 0.083903096 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
13 Hb_005188_060 0.0878640959 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_005883_010 0.0883838797 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003126_030 0.0886827824 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005539_190 0.089084936 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
17 Hb_050847_020 0.0894632824 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_011386_040 0.0895188634 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
19 Hb_000351_140 0.0895688541 - - PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X3 [Pyrus x bretschneideri]
20 Hb_018790_070 0.0919570973 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]

Gene co-expression network

sample Hb_008554_120 Hb_008554_120 Hb_002301_220 Hb_002301_220 Hb_008554_120--Hb_002301_220 Hb_102129_070 Hb_102129_070 Hb_008554_120--Hb_102129_070 Hb_007982_070 Hb_007982_070 Hb_008554_120--Hb_007982_070 Hb_140049_030 Hb_140049_030 Hb_008554_120--Hb_140049_030 Hb_007229_040 Hb_007229_040 Hb_008554_120--Hb_007229_040 Hb_000771_180 Hb_000771_180 Hb_008554_120--Hb_000771_180 Hb_003656_160 Hb_003656_160 Hb_002301_220--Hb_003656_160 Hb_001541_020 Hb_001541_020 Hb_002301_220--Hb_001541_020 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_022408_010 Hb_022408_010 Hb_002301_220--Hb_022408_010 Hb_003126_030 Hb_003126_030 Hb_102129_070--Hb_003126_030 Hb_000820_120 Hb_000820_120 Hb_102129_070--Hb_000820_120 Hb_005539_190 Hb_005539_190 Hb_102129_070--Hb_005539_190 Hb_001083_030 Hb_001083_030 Hb_102129_070--Hb_001083_030 Hb_000953_030 Hb_000953_030 Hb_102129_070--Hb_000953_030 Hb_000300_360 Hb_000300_360 Hb_007982_070--Hb_000300_360 Hb_031042_070 Hb_031042_070 Hb_007982_070--Hb_031042_070 Hb_000406_240 Hb_000406_240 Hb_007982_070--Hb_000406_240 Hb_000270_460 Hb_000270_460 Hb_007982_070--Hb_000270_460 Hb_007558_120 Hb_007558_120 Hb_007982_070--Hb_007558_120 Hb_032202_110 Hb_032202_110 Hb_007982_070--Hb_032202_110 Hb_002045_150 Hb_002045_150 Hb_140049_030--Hb_002045_150 Hb_140049_030--Hb_000771_180 Hb_140049_030--Hb_000300_360 Hb_050847_020 Hb_050847_020 Hb_140049_030--Hb_050847_020 Hb_140049_020 Hb_140049_020 Hb_140049_030--Hb_140049_020 Hb_001545_200 Hb_001545_200 Hb_140049_030--Hb_001545_200 Hb_007229_040--Hb_140049_020 Hb_001117_190 Hb_001117_190 Hb_007229_040--Hb_001117_190 Hb_005883_010 Hb_005883_010 Hb_007229_040--Hb_005883_010 Hb_000320_380 Hb_000320_380 Hb_007229_040--Hb_000320_380 Hb_005188_060 Hb_005188_060 Hb_007229_040--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_007229_040--Hb_007943_120 Hb_002783_310 Hb_002783_310 Hb_000771_180--Hb_002783_310 Hb_000771_180--Hb_050847_020 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
180.379 120.804 92.2825 44.117 150.577 131.44
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.1318 59.541 81.0715 83.6508 32.4396

CAGE analysis