Hb_007982_070

Information

Type -
Description -
Location Contig7982: 65146-69181
Sequence    

Annotation

kegg
ID rcu:RCOM_0665610
description Protein CPR-5, putative
nr
ID XP_012075210.1
description PREDICTED: protein CPR-5 [Jatropha curcas]
swissprot
ID Q9LV85
description Protein CPR-5 OS=Arabidopsis thaliana GN=CPR5 PE=1 SV=1
trembl
ID A0A067KSK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09389 PE=4 SV=1
Gene Ontology
ID GO:0006952
description protein cpr-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58617: 65443-68896 , PASA_asmbl_58618: 68906-69039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007982_070 0.0 - - PREDICTED: protein CPR-5 [Jatropha curcas]
2 Hb_000300_360 0.0615266096 - - PREDICTED: exosome component 10 [Jatropha curcas]
3 Hb_031042_070 0.0617837337 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000406_240 0.062191511 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
5 Hb_000270_460 0.0689937292 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
6 Hb_007558_120 0.070177875 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
7 Hb_032202_110 0.0720939258 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
8 Hb_001633_040 0.0723263857 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
9 Hb_008554_120 0.0756075946 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
10 Hb_033883_060 0.0785338435 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
11 Hb_001486_080 0.0811142982 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
12 Hb_006355_010 0.0823368253 - - PREDICTED: protein NLRC3 [Jatropha curcas]
13 Hb_007632_020 0.083635757 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
14 Hb_080147_040 0.0838995667 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
15 Hb_005883_010 0.0843822669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000796_190 0.0845574051 - - hypothetical protein F383_31148 [Gossypium arboreum]
17 Hb_000002_040 0.0846201879 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
18 Hb_001454_320 0.0847938469 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
19 Hb_010193_050 0.0851978141 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002163_010 0.0854967239 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]

Gene co-expression network

sample Hb_007982_070 Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_007982_070--Hb_000300_360 Hb_031042_070 Hb_031042_070 Hb_007982_070--Hb_031042_070 Hb_000406_240 Hb_000406_240 Hb_007982_070--Hb_000406_240 Hb_000270_460 Hb_000270_460 Hb_007982_070--Hb_000270_460 Hb_007558_120 Hb_007558_120 Hb_007982_070--Hb_007558_120 Hb_032202_110 Hb_032202_110 Hb_007982_070--Hb_032202_110 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_140049_020 Hb_140049_020 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_000300_360--Hb_007558_120 Hb_031042_070--Hb_001633_040 Hb_033883_060 Hb_033883_060 Hb_031042_070--Hb_033883_060 Hb_031042_070--Hb_000300_360 Hb_002163_010 Hb_002163_010 Hb_031042_070--Hb_002163_010 Hb_007632_020 Hb_007632_020 Hb_031042_070--Hb_007632_020 Hb_017075_030 Hb_017075_030 Hb_000406_240--Hb_017075_030 Hb_001486_080 Hb_001486_080 Hb_000406_240--Hb_001486_080 Hb_005883_010 Hb_005883_010 Hb_000406_240--Hb_005883_010 Hb_000140_330 Hb_000140_330 Hb_000406_240--Hb_000140_330 Hb_004635_050 Hb_004635_050 Hb_000406_240--Hb_004635_050 Hb_001102_080 Hb_001102_080 Hb_000270_460--Hb_001102_080 Hb_000270_460--Hb_000300_360 Hb_001143_180 Hb_001143_180 Hb_000270_460--Hb_001143_180 Hb_002045_150 Hb_002045_150 Hb_000270_460--Hb_002045_150 Hb_000270_460--Hb_007558_120 Hb_007558_120--Hb_000796_190 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_000329_130 Hb_000329_130 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_010738_010 Hb_010738_010 Hb_032202_110--Hb_010738_010 Hb_111198_010 Hb_111198_010 Hb_032202_110--Hb_111198_010 Hb_032202_110--Hb_000300_360 Hb_011386_040 Hb_011386_040 Hb_032202_110--Hb_011386_040 Hb_000771_180 Hb_000771_180 Hb_032202_110--Hb_000771_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.851 19.0349 13.1322 8.99958 18.7237 22.6058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2516 9.07126 9.94788 12.9179 7.15579

CAGE analysis