Hb_000270_460

Information

Type -
Description -
Location Contig270: 357258-361835
Sequence    

Annotation

kegg
ID rcu:RCOM_1512770
description cell division cycle, putative
nr
ID XP_012080150.1
description PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
swissprot
ID Q9STS3
description Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1
trembl
ID A0A067KH57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11535 PE=4 SV=1
Gene Ontology
ID GO:0005680
description anaphase-promoting complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28224: 357310-358788 , PASA_asmbl_28225: 360376-361747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_460 0.0 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
2 Hb_007982_070 0.0689937292 - - PREDICTED: protein CPR-5 [Jatropha curcas]
3 Hb_001102_080 0.0740153575 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
4 Hb_000300_360 0.0744489797 - - PREDICTED: exosome component 10 [Jatropha curcas]
5 Hb_001143_180 0.0748343711 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
6 Hb_002045_150 0.0753671301 - - histone acetyltransferase gcn5, putative [Ricinus communis]
7 Hb_007558_120 0.0774719386 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_000359_120 0.0798955544 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001953_150 0.0811828467 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
10 Hb_050847_020 0.0812960683 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_002942_050 0.0818583731 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
12 Hb_003680_230 0.0839798944 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
13 Hb_000059_140 0.0842016378 - - rnase h, putative [Ricinus communis]
14 Hb_000868_060 0.0848833407 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
15 Hb_006355_010 0.0848856068 - - PREDICTED: protein NLRC3 [Jatropha curcas]
16 Hb_000648_100 0.0884651741 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
17 Hb_080147_040 0.0901478776 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
18 Hb_001799_050 0.090151168 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
19 Hb_000771_180 0.0910613435 - - polypyrimidine tract binding protein, putative [Ricinus communis]
20 Hb_005965_030 0.0914235977 - - hypothetical protein JCGZ_16415 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_460 Hb_000270_460 Hb_007982_070 Hb_007982_070 Hb_000270_460--Hb_007982_070 Hb_001102_080 Hb_001102_080 Hb_000270_460--Hb_001102_080 Hb_000300_360 Hb_000300_360 Hb_000270_460--Hb_000300_360 Hb_001143_180 Hb_001143_180 Hb_000270_460--Hb_001143_180 Hb_002045_150 Hb_002045_150 Hb_000270_460--Hb_002045_150 Hb_007558_120 Hb_007558_120 Hb_000270_460--Hb_007558_120 Hb_007982_070--Hb_000300_360 Hb_031042_070 Hb_031042_070 Hb_007982_070--Hb_031042_070 Hb_000406_240 Hb_000406_240 Hb_007982_070--Hb_000406_240 Hb_007982_070--Hb_007558_120 Hb_032202_110 Hb_032202_110 Hb_007982_070--Hb_032202_110 Hb_000480_010 Hb_000480_010 Hb_001102_080--Hb_000480_010 Hb_002888_070 Hb_002888_070 Hb_001102_080--Hb_002888_070 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_140049_020 Hb_140049_020 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_000300_360--Hb_007558_120 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_000291_060 Hb_000291_060 Hb_001143_180--Hb_000291_060 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_006816_050 Hb_006816_050 Hb_001143_180--Hb_006816_050 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_140049_030 Hb_140049_030 Hb_002045_150--Hb_140049_030 Hb_050847_020 Hb_050847_020 Hb_002045_150--Hb_050847_020 Hb_000771_180 Hb_000771_180 Hb_002045_150--Hb_000771_180 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160 Hb_007558_120--Hb_000796_190 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_000329_130 Hb_000329_130 Hb_007558_120--Hb_000329_130 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0919 10.6786 11.6952 6.98309 13.6009 14.1129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26731 6.13237 4.27729 10.0852 4.87488

CAGE analysis