Hb_018790_070

Information

Type -
Description -
Location Contig18790: 67330-89218
Sequence    

Annotation

kegg
ID rcu:RCOM_0519620
description ATP binding protein, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012092431.1
description PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
swissprot
ID C0LGN2
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
trembl
ID B9SS08
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0519620 PE=4 SV=1
Gene Ontology
ID GO:0005622
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18529: 73711-74998 , PASA_asmbl_18530: 77002-77474 , PASA_asmbl_18531: 88510-89095 , PASA_asmbl_18532: 88968-89252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018790_070 0.0 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
2 Hb_001102_080 0.0744104868 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
3 Hb_002942_050 0.0842411085 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
4 Hb_000392_050 0.08452757 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
5 Hb_002157_260 0.0868730637 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
6 Hb_000395_020 0.0882860957 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
7 Hb_000480_010 0.0884366287 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001050_010 0.0885161947 - - Advillin [Gossypium arboreum]
9 Hb_000868_060 0.0894584331 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
10 Hb_000011_360 0.0914894933 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
11 Hb_000002_490 0.0917308248 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
12 Hb_002311_070 0.0919216623 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
13 Hb_008554_120 0.0919570973 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
14 Hb_032278_020 0.0921071134 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
15 Hb_001545_200 0.0936646944 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
16 Hb_011609_170 0.0938800701 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
17 Hb_002888_070 0.0939039289 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
18 Hb_003126_100 0.0951504431 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
19 Hb_005965_030 0.0953064402 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
20 Hb_000351_140 0.095683303 - - PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X3 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_018790_070 Hb_018790_070 Hb_001102_080 Hb_001102_080 Hb_018790_070--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_018790_070--Hb_002942_050 Hb_000392_050 Hb_000392_050 Hb_018790_070--Hb_000392_050 Hb_002157_260 Hb_002157_260 Hb_018790_070--Hb_002157_260 Hb_000395_020 Hb_000395_020 Hb_018790_070--Hb_000395_020 Hb_000480_010 Hb_000480_010 Hb_018790_070--Hb_000480_010 Hb_001102_080--Hb_000480_010 Hb_002888_070 Hb_002888_070 Hb_001102_080--Hb_002888_070 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_011310_130 Hb_011310_130 Hb_002942_050--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_002942_050--Hb_000777_050 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_011310_210 Hb_011310_210 Hb_002942_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_000785_030 Hb_000785_030 Hb_000392_050--Hb_000785_030 Hb_009222_010 Hb_009222_010 Hb_000392_050--Hb_009222_010 Hb_000392_050--Hb_001102_080 Hb_000392_050--Hb_002942_050 Hb_001142_050 Hb_001142_050 Hb_000392_050--Hb_001142_050 Hb_005965_030 Hb_005965_030 Hb_002157_260--Hb_005965_030 Hb_002045_150 Hb_002045_150 Hb_002157_260--Hb_002045_150 Hb_000160_350 Hb_000160_350 Hb_002157_260--Hb_000160_350 Hb_006452_160 Hb_006452_160 Hb_002157_260--Hb_006452_160 Hb_006960_050 Hb_006960_050 Hb_002157_260--Hb_006960_050 Hb_001408_100 Hb_001408_100 Hb_002157_260--Hb_001408_100 Hb_000395_020--Hb_000868_060 Hb_000523_050 Hb_000523_050 Hb_000395_020--Hb_000523_050 Hb_001040_040 Hb_001040_040 Hb_000395_020--Hb_001040_040 Hb_003813_040 Hb_003813_040 Hb_000395_020--Hb_003813_040 Hb_001050_010 Hb_001050_010 Hb_000395_020--Hb_001050_010 Hb_002078_020 Hb_002078_020 Hb_000395_020--Hb_002078_020 Hb_003126_100 Hb_003126_100 Hb_000480_010--Hb_003126_100 Hb_000480_010--Hb_002888_070 Hb_001341_120 Hb_001341_120 Hb_000480_010--Hb_001341_120 Hb_000480_010--Hb_000868_060 Hb_000480_010--Hb_007044_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.797711 0.406003 0.582684 0.354798 0.864945 0.655068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.2311 0.31358 0.302073 0.419344 0.148344

CAGE analysis