Hb_000785_030

Information

Type -
Description -
Location Contig785: 18065-27714
Sequence    

Annotation

kegg
ID rcu:RCOM_0808030
description hypothetical protein
nr
ID XP_002520908.1
description hypothetical protein RCOM_0808030 [Ricinus communis]
swissprot
ID B3QMC9
description UPF0301 protein Cpar_0662 OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0662 PE=3 SV=1
trembl
ID B9S4I9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0808030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58074: 17849-47286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000785_030 0.0 - - hypothetical protein RCOM_0808030 [Ricinus communis]
2 Hb_000392_050 0.0529712638 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
3 Hb_009222_010 0.055139497 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000959_270 0.0757076636 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
5 Hb_002942_050 0.0779743568 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
6 Hb_001910_020 0.0810034189 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
7 Hb_000059_140 0.0823554216 - - rnase h, putative [Ricinus communis]
8 Hb_001357_380 0.0836290943 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_001142_050 0.0864156599 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
10 Hb_000106_130 0.0881585363 - - unnamed protein product [Vitis vinifera]
11 Hb_001894_030 0.0896055954 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
12 Hb_001085_320 0.0906870731 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
13 Hb_001105_010 0.0910057452 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
14 Hb_011848_010 0.0920446028 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
15 Hb_003467_010 0.0939768964 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
16 Hb_004450_060 0.0940311616 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
17 Hb_001143_180 0.0952388257 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
18 Hb_003050_370 0.095562625 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
19 Hb_030131_040 0.0965483265 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
20 Hb_000787_170 0.0971385274 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]

Gene co-expression network

sample Hb_000785_030 Hb_000785_030 Hb_000392_050 Hb_000392_050 Hb_000785_030--Hb_000392_050 Hb_009222_010 Hb_009222_010 Hb_000785_030--Hb_009222_010 Hb_000959_270 Hb_000959_270 Hb_000785_030--Hb_000959_270 Hb_002942_050 Hb_002942_050 Hb_000785_030--Hb_002942_050 Hb_001910_020 Hb_001910_020 Hb_000785_030--Hb_001910_020 Hb_000059_140 Hb_000059_140 Hb_000785_030--Hb_000059_140 Hb_000392_050--Hb_009222_010 Hb_018790_070 Hb_018790_070 Hb_000392_050--Hb_018790_070 Hb_001102_080 Hb_001102_080 Hb_000392_050--Hb_001102_080 Hb_000392_050--Hb_002942_050 Hb_001142_050 Hb_001142_050 Hb_000392_050--Hb_001142_050 Hb_011848_010 Hb_011848_010 Hb_009222_010--Hb_011848_010 Hb_000189_340 Hb_000189_340 Hb_009222_010--Hb_000189_340 Hb_009222_010--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_009222_010--Hb_011942_080 Hb_003467_010 Hb_003467_010 Hb_009222_010--Hb_003467_010 Hb_000732_120 Hb_000732_120 Hb_000959_270--Hb_000732_120 Hb_033153_070 Hb_033153_070 Hb_000959_270--Hb_033153_070 Hb_006960_050 Hb_006960_050 Hb_000959_270--Hb_006960_050 Hb_008511_030 Hb_008511_030 Hb_000959_270--Hb_008511_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180 Hb_011310_130 Hb_011310_130 Hb_002942_050--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_002942_050--Hb_000777_050 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_011310_210 Hb_011310_210 Hb_002942_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_073973_160 Hb_073973_160 Hb_001910_020--Hb_073973_160 Hb_001882_040 Hb_001882_040 Hb_001910_020--Hb_001882_040 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_001357_380 Hb_001357_380 Hb_000059_140--Hb_001357_380 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_001486_340 Hb_001486_340 Hb_000059_140--Hb_001486_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3253 16.008 19.3098 16.0189 28.5344 32.5152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1851 16.7567 6.32098 10.9972 6.71158

CAGE analysis