Hb_032278_020

Information

Type transcription factor
Description TF Family: C3H
Location Contig32278: 22005-29410
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08100g
description POPTRDRAFT_652935; hypothetical protein
nr
ID XP_012084301.1
description PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
swissprot
ID Q9FWS3
description Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis thaliana GN=CG1 PE=1 SV=2
trembl
ID A0A067K7I7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19788 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34223: 22074-23063 , PASA_asmbl_34224: 27557-31185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032278_020 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
2 Hb_000059_140 0.065584927 - - rnase h, putative [Ricinus communis]
3 Hb_000648_100 0.0713700261 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
4 Hb_000923_080 0.0723998822 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
5 Hb_011930_080 0.077001304 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
6 Hb_001102_080 0.0807408714 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
7 Hb_004209_020 0.081332332 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
8 Hb_001427_190 0.0837286129 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
9 Hb_004235_080 0.0855547218 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
10 Hb_001433_070 0.0863006251 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
11 Hb_008159_020 0.0868044901 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
12 Hb_000011_360 0.0869360635 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
13 Hb_002888_070 0.0869853124 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
14 Hb_050847_020 0.0880878864 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000768_110 0.0881426656 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
16 Hb_001347_040 0.0881960899 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
17 Hb_131646_010 0.0887831566 - - protein arginine n-methyltransferase, putative [Ricinus communis]
18 Hb_000208_210 0.0899479211 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
19 Hb_002942_050 0.0899973137 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
20 Hb_000771_180 0.0909998678 - - polypyrimidine tract binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_032278_020 Hb_032278_020 Hb_000059_140 Hb_000059_140 Hb_032278_020--Hb_000059_140 Hb_000648_100 Hb_000648_100 Hb_032278_020--Hb_000648_100 Hb_000923_080 Hb_000923_080 Hb_032278_020--Hb_000923_080 Hb_011930_080 Hb_011930_080 Hb_032278_020--Hb_011930_080 Hb_001102_080 Hb_001102_080 Hb_032278_020--Hb_001102_080 Hb_004209_020 Hb_004209_020 Hb_032278_020--Hb_004209_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_001357_380 Hb_001357_380 Hb_000059_140--Hb_001357_380 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_009222_010 Hb_009222_010 Hb_000059_140--Hb_009222_010 Hb_001486_340 Hb_001486_340 Hb_000059_140--Hb_001486_340 Hb_000470_070 Hb_000470_070 Hb_000648_100--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_000648_100--Hb_002078_100 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_019654_040 Hb_019654_040 Hb_000648_100--Hb_019654_040 Hb_000648_100--Hb_000923_080 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_004235_080 Hb_004235_080 Hb_000923_080--Hb_004235_080 Hb_010053_030 Hb_010053_030 Hb_000923_080--Hb_010053_030 Hb_000923_080--Hb_004209_020 Hb_008159_020 Hb_008159_020 Hb_000923_080--Hb_008159_020 Hb_104061_020 Hb_104061_020 Hb_000923_080--Hb_104061_020 Hb_001427_190 Hb_001427_190 Hb_011930_080--Hb_001427_190 Hb_002374_320 Hb_002374_320 Hb_011930_080--Hb_002374_320 Hb_011930_080--Hb_019654_040 Hb_011930_080--Hb_000648_100 Hb_011930_080--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_011930_080--Hb_002888_070 Hb_000480_010 Hb_000480_010 Hb_001102_080--Hb_000480_010 Hb_001102_080--Hb_002888_070 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070 Hb_002835_230 Hb_002835_230 Hb_004209_020--Hb_002835_230 Hb_131646_010 Hb_131646_010 Hb_004209_020--Hb_131646_010 Hb_004209_020--Hb_004235_080 Hb_004785_100 Hb_004785_100 Hb_004209_020--Hb_004785_100 Hb_002375_010 Hb_002375_010 Hb_004209_020--Hb_002375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1554 8.66276 10.8578 6.01779 16.4096 17.9019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.71129 7.67632 5.20372 11.0034 4.21682

CAGE analysis