Hb_002078_100

Information

Type -
Description -
Location Contig2078: 54504-65136
Sequence    

Annotation

kegg
ID fve:101304833
description mannosyl-oligosaccharide glucosidase GCS1-like
nr
ID XP_012074681.1
description PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
swissprot
ID F4HTM3
description Mannosyl-oligosaccharide glucosidase GCS1 OS=Arabidopsis thaliana GN=GCS1 PE=1 SV=1
trembl
ID A0A067KHW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10442 PE=4 SV=1
Gene Ontology
ID GO:0004573
description mannosyl-oligosaccharide glucosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21411: 54759-65122 , PASA_asmbl_21412: 55247-64020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_100 0.0 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
2 Hb_000470_070 0.0425734844 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
3 Hb_009296_010 0.0529674484 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
4 Hb_000648_100 0.0543203235 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
5 Hb_174821_010 0.0614129022 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
6 Hb_000109_100 0.0634064317 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
7 Hb_019654_040 0.0647103396 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
8 Hb_001935_110 0.0656085458 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
9 Hb_027380_140 0.0671811716 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
10 Hb_011930_080 0.0676698755 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
11 Hb_000505_020 0.0676862272 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
12 Hb_001427_190 0.0703366708 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
13 Hb_001454_320 0.0711856628 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
14 Hb_010053_030 0.0715180777 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
15 Hb_000160_290 0.0729379464 - - unnamed protein product [Vitis vinifera]
16 Hb_001454_370 0.0732894522 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
17 Hb_000152_260 0.0734347801 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
18 Hb_002235_160 0.074099987 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
19 Hb_000300_440 0.0748255655 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
20 Hb_000785_040 0.0749548125 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_100 Hb_002078_100 Hb_000470_070 Hb_000470_070 Hb_002078_100--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_002078_100--Hb_009296_010 Hb_000648_100 Hb_000648_100 Hb_002078_100--Hb_000648_100 Hb_174821_010 Hb_174821_010 Hb_002078_100--Hb_174821_010 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_019654_040 Hb_019654_040 Hb_002078_100--Hb_019654_040 Hb_000470_070--Hb_174821_010 Hb_000470_070--Hb_019654_040 Hb_000470_070--Hb_000648_100 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_009296_010--Hb_019654_040 Hb_027380_140 Hb_027380_140 Hb_009296_010--Hb_027380_140 Hb_012053_080 Hb_012053_080 Hb_009296_010--Hb_012053_080 Hb_001935_110 Hb_001935_110 Hb_009296_010--Hb_001935_110 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_000648_100--Hb_019654_040 Hb_000923_080 Hb_000923_080 Hb_000648_100--Hb_000923_080 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_174821_010--Hb_000648_100 Hb_000613_080 Hb_000613_080 Hb_174821_010--Hb_000613_080 Hb_174821_010--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_174821_010--Hb_003966_030 Hb_000505_020 Hb_000505_020 Hb_000109_100--Hb_000505_020 Hb_000160_290 Hb_000160_290 Hb_000109_100--Hb_000160_290 Hb_000300_440 Hb_000300_440 Hb_000109_100--Hb_000300_440 Hb_001623_480 Hb_001623_480 Hb_000109_100--Hb_001623_480 Hb_003299_070 Hb_003299_070 Hb_000109_100--Hb_003299_070 Hb_019654_040--Hb_001935_110 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9703 13.2221 12.1348 11.8697 20.844 22.9848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3547 5.81084 8.23045 17.0352 10.9223

CAGE analysis