Hb_001935_110

Information

Type -
Description -
Location Contig1935: 83190-92501
Sequence    

Annotation

kegg
ID rcu:RCOM_1276510
description chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative
nr
ID XP_012083640.1
description PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
swissprot
ID P28769
description T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=1 SV=1
trembl
ID A0A067JXX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14582 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19315: 83173-92577
cDNA
(Sanger)
(ID:Location)		 003_I21.ab1: 83265-87210 , 011_D06.ab1: 83265-87477 , 044_K18.ab1: 83265-87174 , 052_N22.ab1: 83265-87459

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_110 0.0 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
2 Hb_012053_080 0.0546177147 - - AP-2 complex subunit alpha, putative [Ricinus communis]
3 Hb_019654_040 0.0573921651 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
4 Hb_001427_190 0.0601969194 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
5 Hb_000333_060 0.0626034095 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
6 Hb_000470_070 0.0637617917 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
7 Hb_002078_100 0.0656085458 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
8 Hb_009296_010 0.0689545384 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
9 Hb_160459_040 0.0693624433 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
10 Hb_011930_080 0.0710423412 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
11 Hb_027380_140 0.0733210757 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
12 Hb_000923_080 0.0740897032 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
13 Hb_002631_170 0.0743123935 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
14 Hb_001369_040 0.0754081828 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
15 Hb_028872_070 0.0777197429 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
16 Hb_001454_370 0.0788975308 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
17 Hb_025477_040 0.0792137251 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
18 Hb_008024_030 0.0806669491 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
19 Hb_000603_030 0.0809157922 - - Ribonuclease III, putative [Ricinus communis]
20 Hb_005053_010 0.081367074 - - PREDICTED: protease Do-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_001935_110 Hb_001935_110 Hb_012053_080 Hb_012053_080 Hb_001935_110--Hb_012053_080 Hb_019654_040 Hb_019654_040 Hb_001935_110--Hb_019654_040 Hb_001427_190 Hb_001427_190 Hb_001935_110--Hb_001427_190 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_000470_070 Hb_000470_070 Hb_001935_110--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_001935_110--Hb_002078_100 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_027380_140 Hb_027380_140 Hb_012053_080--Hb_027380_140 Hb_009296_010 Hb_009296_010 Hb_012053_080--Hb_009296_010 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040 Hb_019654_040--Hb_000470_070 Hb_019654_040--Hb_009296_010 Hb_000648_100 Hb_000648_100 Hb_019654_040--Hb_000648_100 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_001427_190--Hb_011930_080 Hb_000152_260 Hb_000152_260 Hb_001427_190--Hb_000152_260 Hb_001427_190--Hb_019654_040 Hb_001427_190--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_001427_190--Hb_002888_070 Hb_028308_010 Hb_028308_010 Hb_000333_060--Hb_028308_010 Hb_000109_210 Hb_000109_210 Hb_000333_060--Hb_000109_210 Hb_002684_040 Hb_002684_040 Hb_000333_060--Hb_002684_040 Hb_000333_060--Hb_002078_100 Hb_007632_240 Hb_007632_240 Hb_000333_060--Hb_007632_240 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_000470_070--Hb_000648_100 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_002078_100--Hb_009296_010 Hb_002078_100--Hb_000648_100 Hb_002078_100--Hb_174821_010 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_002078_100--Hb_019654_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.0916 31.4723 41.2469 27.1011 57.852 58.2814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.9314 16.4656 25.2394 47.7503 32.9374

CAGE analysis