Hb_160459_040

Information

Type -
Description -
Location Contig160459: 15227-23638
Sequence    

Annotation

kegg
ID rcu:RCOM_0152200
description hypothetical protein
nr
ID KDP45011.1
description hypothetical protein JCGZ_01511 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L972
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01511 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14366: 15921-21848 , PASA_asmbl_14367: 16981-17279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160459_040 0.0 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
2 Hb_005053_010 0.0469732987 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
3 Hb_009771_110 0.0521042291 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
4 Hb_012053_080 0.0562710269 - - AP-2 complex subunit alpha, putative [Ricinus communis]
5 Hb_000261_030 0.0631489256 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
6 Hb_002631_140 0.0671574414 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
7 Hb_028872_070 0.0675147194 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
8 Hb_001935_110 0.0693624433 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
9 Hb_000152_260 0.0694906861 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
10 Hb_000960_050 0.0702400783 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
11 Hb_006618_090 0.0721674481 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
12 Hb_000914_120 0.0743004416 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
13 Hb_000230_090 0.0747677987 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
14 Hb_000035_410 0.0749362117 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
15 Hb_000398_080 0.0753147879 - - tip120, putative [Ricinus communis]
16 Hb_002805_190 0.0770861123 - - spliceosome associated protein, putative [Ricinus communis]
17 Hb_089140_050 0.0773121727 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
18 Hb_001377_110 0.0774315475 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
19 Hb_001268_280 0.0782576487 - - conserved hypothetical protein [Ricinus communis]
20 Hb_027380_140 0.0783390551 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_160459_040 Hb_160459_040 Hb_005053_010 Hb_005053_010 Hb_160459_040--Hb_005053_010 Hb_009771_110 Hb_009771_110 Hb_160459_040--Hb_009771_110 Hb_012053_080 Hb_012053_080 Hb_160459_040--Hb_012053_080 Hb_000261_030 Hb_000261_030 Hb_160459_040--Hb_000261_030 Hb_002631_140 Hb_002631_140 Hb_160459_040--Hb_002631_140 Hb_028872_070 Hb_028872_070 Hb_160459_040--Hb_028872_070 Hb_005053_010--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_005053_010--Hb_006618_090 Hb_001504_040 Hb_001504_040 Hb_005053_010--Hb_001504_040 Hb_007929_080 Hb_007929_080 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_009771_110--Hb_006618_090 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_000523_080 Hb_000523_080 Hb_009771_110--Hb_000523_080 Hb_001935_110 Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_027380_140 Hb_027380_140 Hb_012053_080--Hb_027380_140 Hb_009296_010 Hb_009296_010 Hb_012053_080--Hb_009296_010 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_000082_070 Hb_000082_070 Hb_002631_140--Hb_000082_070 Hb_002631_140--Hb_009771_110 Hb_143489_010 Hb_143489_010 Hb_002631_140--Hb_143489_010 Hb_002631_140--Hb_000261_030 Hb_001789_040 Hb_001789_040 Hb_002631_140--Hb_001789_040 Hb_000603_030 Hb_000603_030 Hb_028872_070--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_028872_070--Hb_000398_080 Hb_004096_190 Hb_004096_190 Hb_028872_070--Hb_004096_190 Hb_028872_070--Hb_009771_110 Hb_133702_030 Hb_133702_030 Hb_028872_070--Hb_133702_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0607 11.9257 12.6835 9.63396 14.4105 17.603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.70827 4.69936 5.4691 11.5005 12.0891

CAGE analysis