Hb_143489_010

Information

Type -
Description -
Location Contig143489: 1760-5116
Sequence    

Annotation

kegg
ID rcu:RCOM_1004240
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012084226.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
swissprot
ID Q8GUG7
description DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2
trembl
ID A0A067JVV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19102 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11431: 2311-4859 , PASA_asmbl_11432: 4879-5915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143489_010 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
2 Hb_002631_140 0.0714583017 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
3 Hb_143489_020 0.0783398308 - - -
4 Hb_006573_170 0.0854303382 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003124_100 0.0863425643 - - -
6 Hb_018118_010 0.0910298074 - - DNA polymerase I, putative [Ricinus communis]
7 Hb_000025_710 0.0912030884 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
8 Hb_002909_090 0.0913475361 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
9 Hb_000086_690 0.0918946124 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
10 Hb_012146_050 0.0924375385 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
11 Hb_000731_010 0.0930465966 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
12 Hb_001381_050 0.093659049 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_000925_090 0.094195532 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
14 Hb_000027_050 0.0947089174 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
15 Hb_000083_070 0.0948103974 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
16 Hb_007994_010 0.0948273962 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
17 Hb_000788_070 0.0953989515 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
18 Hb_000265_230 0.0960235977 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
19 Hb_009476_090 0.0964749251 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
20 Hb_005402_040 0.0977127618 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_143489_010 Hb_143489_010 Hb_002631_140 Hb_002631_140 Hb_143489_010--Hb_002631_140 Hb_143489_020 Hb_143489_020 Hb_143489_010--Hb_143489_020 Hb_006573_170 Hb_006573_170 Hb_143489_010--Hb_006573_170 Hb_003124_100 Hb_003124_100 Hb_143489_010--Hb_003124_100 Hb_018118_010 Hb_018118_010 Hb_143489_010--Hb_018118_010 Hb_000025_710 Hb_000025_710 Hb_143489_010--Hb_000025_710 Hb_000082_070 Hb_000082_070 Hb_002631_140--Hb_000082_070 Hb_009771_110 Hb_009771_110 Hb_002631_140--Hb_009771_110 Hb_160459_040 Hb_160459_040 Hb_002631_140--Hb_160459_040 Hb_000261_030 Hb_000261_030 Hb_002631_140--Hb_000261_030 Hb_001789_040 Hb_001789_040 Hb_002631_140--Hb_001789_040 Hb_012184_060 Hb_012184_060 Hb_143489_020--Hb_012184_060 Hb_012146_050 Hb_012146_050 Hb_143489_020--Hb_012146_050 Hb_000788_070 Hb_000788_070 Hb_143489_020--Hb_000788_070 Hb_001662_180 Hb_001662_180 Hb_143489_020--Hb_001662_180 Hb_188063_010 Hb_188063_010 Hb_143489_020--Hb_188063_010 Hb_001959_270 Hb_001959_270 Hb_006573_170--Hb_001959_270 Hb_001989_050 Hb_001989_050 Hb_006573_170--Hb_001989_050 Hb_001492_040 Hb_001492_040 Hb_006573_170--Hb_001492_040 Hb_002784_010 Hb_002784_010 Hb_006573_170--Hb_002784_010 Hb_005214_150 Hb_005214_150 Hb_006573_170--Hb_005214_150 Hb_000925_090 Hb_000925_090 Hb_003124_100--Hb_000925_090 Hb_009252_040 Hb_009252_040 Hb_003124_100--Hb_009252_040 Hb_000320_470 Hb_000320_470 Hb_003124_100--Hb_000320_470 Hb_002600_060 Hb_002600_060 Hb_003124_100--Hb_002600_060 Hb_003506_050 Hb_003506_050 Hb_003124_100--Hb_003506_050 Hb_000331_560 Hb_000331_560 Hb_018118_010--Hb_000331_560 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_003203_030 Hb_003203_030 Hb_018118_010--Hb_003203_030 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04379 7.31776 4.38602 3.1665 4.62382 8.46142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.27109 1.71532 2.67181 6.46663 8.6316

CAGE analysis