Hb_143489_020

Information

Type -
Description -
Location Contig143489: 5145-5937
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11432: 4879-5915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143489_020 0.0 - - -
2 Hb_143489_010 0.0783398308 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
3 Hb_012184_060 0.0885348391 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
4 Hb_012146_050 0.0947565382 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
5 Hb_000788_070 0.0975907988 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
6 Hb_001662_180 0.0998465512 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
7 Hb_188063_010 0.1019916465 - - hypothetical protein RCOM_1469330 [Ricinus communis]
8 Hb_003177_060 0.1051941657 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
9 Hb_001188_020 0.1062404535 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
10 Hb_006031_010 0.1105065527 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
11 Hb_000025_710 0.1105921086 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
12 Hb_002639_080 0.1110967608 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
13 Hb_002095_070 0.1111624391 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
14 Hb_002097_050 0.1116436209 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
15 Hb_004327_040 0.1123242863 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
16 Hb_009476_090 0.1146236594 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
17 Hb_006573_170 0.1157496302 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007994_010 0.1158897202 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
19 Hb_000261_150 0.1165077439 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001381_050 0.1167100811 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]

Gene co-expression network

sample Hb_143489_020 Hb_143489_020 Hb_143489_010 Hb_143489_010 Hb_143489_020--Hb_143489_010 Hb_012184_060 Hb_012184_060 Hb_143489_020--Hb_012184_060 Hb_012146_050 Hb_012146_050 Hb_143489_020--Hb_012146_050 Hb_000788_070 Hb_000788_070 Hb_143489_020--Hb_000788_070 Hb_001662_180 Hb_001662_180 Hb_143489_020--Hb_001662_180 Hb_188063_010 Hb_188063_010 Hb_143489_020--Hb_188063_010 Hb_002631_140 Hb_002631_140 Hb_143489_010--Hb_002631_140 Hb_006573_170 Hb_006573_170 Hb_143489_010--Hb_006573_170 Hb_003124_100 Hb_003124_100 Hb_143489_010--Hb_003124_100 Hb_018118_010 Hb_018118_010 Hb_143489_010--Hb_018118_010 Hb_000025_710 Hb_000025_710 Hb_143489_010--Hb_000025_710 Hb_000836_020 Hb_000836_020 Hb_012184_060--Hb_000836_020 Hb_003177_060 Hb_003177_060 Hb_012184_060--Hb_003177_060 Hb_009476_090 Hb_009476_090 Hb_012184_060--Hb_009476_090 Hb_001699_280 Hb_001699_280 Hb_012184_060--Hb_001699_280 Hb_002784_010 Hb_002784_010 Hb_012184_060--Hb_002784_010 Hb_012184_060--Hb_188063_010 Hb_001431_120 Hb_001431_120 Hb_012146_050--Hb_001431_120 Hb_008114_050 Hb_008114_050 Hb_012146_050--Hb_008114_050 Hb_005402_040 Hb_005402_040 Hb_012146_050--Hb_005402_040 Hb_012146_050--Hb_143489_010 Hb_012146_050--Hb_000788_070 Hb_002784_110 Hb_002784_110 Hb_000788_070--Hb_002784_110 Hb_005496_110 Hb_005496_110 Hb_000788_070--Hb_005496_110 Hb_000265_230 Hb_000265_230 Hb_000788_070--Hb_000265_230 Hb_000788_070--Hb_000025_710 Hb_000183_020 Hb_000183_020 Hb_000788_070--Hb_000183_020 Hb_028487_010 Hb_028487_010 Hb_000788_070--Hb_028487_010 Hb_001662_180--Hb_001699_280 Hb_001951_170 Hb_001951_170 Hb_001662_180--Hb_001951_170 Hb_000175_120 Hb_000175_120 Hb_001662_180--Hb_000175_120 Hb_001124_050 Hb_001124_050 Hb_001662_180--Hb_001124_050 Hb_005832_010 Hb_005832_010 Hb_001662_180--Hb_005832_010 Hb_014497_020 Hb_014497_020 Hb_001662_180--Hb_014497_020 Hb_002333_050 Hb_002333_050 Hb_188063_010--Hb_002333_050 Hb_188063_010--Hb_000025_710 Hb_188063_010--Hb_001699_280 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_003581_170 Hb_003581_170 Hb_188063_010--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_188063_010--Hb_000261_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47592 6.76646 2.56337 2.55495 3.45112 7.82337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09811 1.92262 2.01901 6.68618 6.41656

CAGE analysis