Hb_003124_100

Information

Type -
Description -
Location Contig3124: 35733-48334
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33013: 35747-48565 , PASA_asmbl_33015: 40968-41286 , PASA_asmbl_33016: 45971-46166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_100 0.0 - - -
2 Hb_000925_090 0.0761888725 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
3 Hb_009252_040 0.0821791318 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
4 Hb_143489_010 0.0863425643 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
5 Hb_000320_470 0.0883967363 - - calcium-dependent protein kinase [Hevea brasiliensis]
6 Hb_002600_060 0.0884191097 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
7 Hb_003506_050 0.0884793301 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000731_010 0.0887296371 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
9 Hb_000568_050 0.091755006 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
10 Hb_005801_020 0.0922738971 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
11 Hb_002391_050 0.0924047364 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
12 Hb_000826_070 0.0946643603 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000331_560 0.0953619844 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
14 Hb_007545_130 0.0958411382 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_018118_010 0.0978253642 - - DNA polymerase I, putative [Ricinus communis]
16 Hb_000029_350 0.0979165735 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
17 Hb_000749_090 0.1000471913 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_006618_050 0.100794219 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
19 Hb_156279_010 0.1008874909 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
20 Hb_000181_100 0.1015717168 - - PREDICTED: protein starmaker [Jatropha curcas]

Gene co-expression network

sample Hb_003124_100 Hb_003124_100 Hb_000925_090 Hb_000925_090 Hb_003124_100--Hb_000925_090 Hb_009252_040 Hb_009252_040 Hb_003124_100--Hb_009252_040 Hb_143489_010 Hb_143489_010 Hb_003124_100--Hb_143489_010 Hb_000320_470 Hb_000320_470 Hb_003124_100--Hb_000320_470 Hb_002600_060 Hb_002600_060 Hb_003124_100--Hb_002600_060 Hb_003506_050 Hb_003506_050 Hb_003124_100--Hb_003506_050 Hb_001133_030 Hb_001133_030 Hb_000925_090--Hb_001133_030 Hb_012244_020 Hb_012244_020 Hb_000925_090--Hb_012244_020 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_000731_010 Hb_000731_010 Hb_009252_040--Hb_000731_010 Hb_000033_110 Hb_000033_110 Hb_009252_040--Hb_000033_110 Hb_000749_090 Hb_000749_090 Hb_009252_040--Hb_000749_090 Hb_018118_010 Hb_018118_010 Hb_009252_040--Hb_018118_010 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080 Hb_000331_560 Hb_000331_560 Hb_009252_040--Hb_000331_560 Hb_002631_140 Hb_002631_140 Hb_143489_010--Hb_002631_140 Hb_143489_020 Hb_143489_020 Hb_143489_010--Hb_143489_020 Hb_006573_170 Hb_006573_170 Hb_143489_010--Hb_006573_170 Hb_143489_010--Hb_018118_010 Hb_000025_710 Hb_000025_710 Hb_143489_010--Hb_000025_710 Hb_000181_100 Hb_000181_100 Hb_000320_470--Hb_000181_100 Hb_026053_040 Hb_026053_040 Hb_000320_470--Hb_026053_040 Hb_001008_050 Hb_001008_050 Hb_000320_470--Hb_001008_050 Hb_001008_070 Hb_001008_070 Hb_000320_470--Hb_001008_070 Hb_031091_020 Hb_031091_020 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010 Hb_002600_060--Hb_000331_560 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_002600_060--Hb_000083_070 Hb_007545_130 Hb_007545_130 Hb_003506_050--Hb_007545_130 Hb_003506_050--Hb_002600_060 Hb_003506_050--Hb_000925_090 Hb_003506_050--Hb_000331_560 Hb_006618_050 Hb_006618_050 Hb_003506_050--Hb_006618_050 Hb_005250_030 Hb_005250_030 Hb_003506_050--Hb_005250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3858 21.7637 14.758 10.8219 13.0476 19.4331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0307 5.49521 7.51314 21.1754 36.3176

CAGE analysis