Hb_006618_050

Information

Type -
Description -
Location Contig6618: 48683-52664
Sequence    

Annotation

kegg
ID rcu:RCOM_1679710
description translation elongation factor G, putative
nr
ID XP_012087125.1
description PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
swissprot
ID P34811
description Elongation factor G-1, chloroplastic OS=Glycine max GN=fusA1 PE=3 SV=2
trembl
ID A0A067K049
description Elongation factor G, chloroplastic OS=Jatropha curcas GN=JCGZ_20776 PE=3 SV=1
Gene Ontology
ID GO:0005739
description elongation factor g- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53057: 48141-52702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_050 0.0 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
2 Hb_003506_050 0.079437473 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_005250_030 0.0846030005 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
4 Hb_007545_130 0.0889075865 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
5 Hb_000815_170 0.0892488149 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
6 Hb_156279_010 0.0901557879 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
7 Hb_002368_070 0.0903310506 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
8 Hb_005801_020 0.0903928874 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
9 Hb_000714_040 0.0916842569 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
10 Hb_001623_280 0.0954992015 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
11 Hb_003124_100 0.100794219 - - -
12 Hb_031658_040 0.1051592001 - - -
13 Hb_002600_060 0.1080402668 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
14 Hb_011931_060 0.1092032679 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
15 Hb_013459_010 0.1098544183 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
16 Hb_099270_030 0.1121631002 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
17 Hb_002636_110 0.1123500038 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
18 Hb_000925_090 0.113655329 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
19 Hb_012098_070 0.114421624 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
20 Hb_000661_030 0.1154144348 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]

Gene co-expression network

sample Hb_006618_050 Hb_006618_050 Hb_003506_050 Hb_003506_050 Hb_006618_050--Hb_003506_050 Hb_005250_030 Hb_005250_030 Hb_006618_050--Hb_005250_030 Hb_007545_130 Hb_007545_130 Hb_006618_050--Hb_007545_130 Hb_000815_170 Hb_000815_170 Hb_006618_050--Hb_000815_170 Hb_156279_010 Hb_156279_010 Hb_006618_050--Hb_156279_010 Hb_002368_070 Hb_002368_070 Hb_006618_050--Hb_002368_070 Hb_003506_050--Hb_007545_130 Hb_002600_060 Hb_002600_060 Hb_003506_050--Hb_002600_060 Hb_000925_090 Hb_000925_090 Hb_003506_050--Hb_000925_090 Hb_000331_560 Hb_000331_560 Hb_003506_050--Hb_000331_560 Hb_003506_050--Hb_005250_030 Hb_005250_030--Hb_007545_130 Hb_005250_030--Hb_000815_170 Hb_013459_010 Hb_013459_010 Hb_005250_030--Hb_013459_010 Hb_005250_030--Hb_156279_010 Hb_007545_130--Hb_013459_010 Hb_007545_130--Hb_000925_090 Hb_007545_130--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_007545_130--Hb_005211_020 Hb_000815_170--Hb_156279_010 Hb_005801_020 Hb_005801_020 Hb_000815_170--Hb_005801_020 Hb_135572_010 Hb_135572_010 Hb_000815_170--Hb_135572_010 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_000714_040 Hb_000714_040 Hb_000815_170--Hb_000714_040 Hb_156279_010--Hb_005801_020 Hb_099270_030 Hb_099270_030 Hb_156279_010--Hb_099270_030 Hb_006295_020 Hb_006295_020 Hb_156279_010--Hb_006295_020 Hb_011931_060 Hb_011931_060 Hb_002368_070--Hb_011931_060 Hb_002368_070--Hb_005250_030 Hb_002636_110 Hb_002636_110 Hb_002368_070--Hb_002636_110 Hb_002368_070--Hb_001623_280 Hb_031658_040 Hb_031658_040 Hb_002368_070--Hb_031658_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.11746 8.69218 6.42389 3.83638 10.2512 8.73984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11044 2.74812 5.07237 10.6706 22.3784

CAGE analysis