Hb_005801_020

Information

Type -
Description -
Location Contig5801: 33625-38304
Sequence    

Annotation

kegg
ID rcu:RCOM_1176800
description hypothetical protein
nr
ID XP_012088379.1
description PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
swissprot
ID A5YVF1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1
trembl
ID A0A067JW68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25872 PE=4 SV=1
Gene Ontology
ID GO:0044699
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005801_020 0.0 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
2 Hb_000815_170 0.0581060414 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
3 Hb_156279_010 0.0612068707 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
4 Hb_135572_010 0.0871323345 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
5 Hb_000661_030 0.089794438 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
6 Hb_012098_070 0.0903758982 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
7 Hb_006618_050 0.0903928874 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
8 Hb_003124_100 0.0922738971 - - -
9 Hb_005250_030 0.0946290924 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
10 Hb_000922_030 0.0958206508 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
11 Hb_009252_040 0.0966946376 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
12 Hb_127552_040 0.0969339025 - - Uncharacterized protein L484_000643 [Morus notabilis]
13 Hb_007994_010 0.0985456883 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
14 Hb_008387_020 0.099130653 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
15 Hb_000749_090 0.0993844346 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_018118_010 0.1002742174 - - DNA polymerase I, putative [Ricinus communis]
17 Hb_007472_090 0.1018316246 - - unnamed protein product [Coffea canephora]
18 Hb_099270_030 0.1019531125 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
19 Hb_000714_040 0.1024458807 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
20 Hb_000062_450 0.1029459412 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]

Gene co-expression network

sample Hb_005801_020 Hb_005801_020 Hb_000815_170 Hb_000815_170 Hb_005801_020--Hb_000815_170 Hb_156279_010 Hb_156279_010 Hb_005801_020--Hb_156279_010 Hb_135572_010 Hb_135572_010 Hb_005801_020--Hb_135572_010 Hb_000661_030 Hb_000661_030 Hb_005801_020--Hb_000661_030 Hb_012098_070 Hb_012098_070 Hb_005801_020--Hb_012098_070 Hb_006618_050 Hb_006618_050 Hb_005801_020--Hb_006618_050 Hb_000815_170--Hb_156279_010 Hb_000815_170--Hb_135572_010 Hb_005250_030 Hb_005250_030 Hb_000815_170--Hb_005250_030 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_000714_040 Hb_000714_040 Hb_000815_170--Hb_000714_040 Hb_156279_010--Hb_005250_030 Hb_099270_030 Hb_099270_030 Hb_156279_010--Hb_099270_030 Hb_156279_010--Hb_006618_050 Hb_006295_020 Hb_006295_020 Hb_156279_010--Hb_006295_020 Hb_007994_010 Hb_007994_010 Hb_135572_010--Hb_007994_010 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_004143_160 Hb_004143_160 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_000922_030 Hb_000922_030 Hb_135572_010--Hb_000922_030 Hb_000679_020 Hb_000679_020 Hb_000661_030--Hb_000679_020 Hb_001259_020 Hb_001259_020 Hb_000661_030--Hb_001259_020 Hb_000027_190 Hb_000027_190 Hb_000661_030--Hb_000027_190 Hb_188126_010 Hb_188126_010 Hb_000661_030--Hb_188126_010 Hb_000661_030--Hb_000815_170 Hb_000906_100 Hb_000906_100 Hb_000661_030--Hb_000906_100 Hb_012098_070--Hb_099270_030 Hb_005488_170 Hb_005488_170 Hb_012098_070--Hb_005488_170 Hb_012098_070--Hb_000815_170 Hb_003607_070 Hb_003607_070 Hb_012098_070--Hb_003607_070 Hb_012098_070--Hb_005250_030 Hb_003506_050 Hb_003506_050 Hb_006618_050--Hb_003506_050 Hb_006618_050--Hb_005250_030 Hb_007545_130 Hb_007545_130 Hb_006618_050--Hb_007545_130 Hb_006618_050--Hb_000815_170 Hb_002368_070 Hb_002368_070 Hb_006618_050--Hb_002368_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63787 4.14785 2.89267 3.26335 4.48612 5.91588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82253 1.70484 3.53394 6.90666 10.9282

CAGE analysis