Hb_001623_280

Information

Type -
Description -
Location Contig1623: 185212-196070
Sequence    

Annotation

kegg
ID rcu:RCOM_1023530
description chaperonin-60kD, ch60, putative
nr
ID XP_012077667.1
description PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
swissprot
ID Q05046
description Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1
trembl
ID A0A067KEE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12922 PE=3 SV=1
Gene Ontology
ID GO:0005739
description chaperonin cpn60- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14702: 185105-190065 , PASA_asmbl_14703: 192145-192278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_280 0.0 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
2 Hb_000815_170 0.080520604 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
3 Hb_000608_300 0.0846023029 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
4 Hb_026053_040 0.0888504275 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000025_270 0.0905051262 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
6 Hb_004306_030 0.0919622205 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
7 Hb_004724_410 0.0925889735 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
8 Hb_000033_110 0.0938840843 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
9 Hb_005211_020 0.0951303824 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
10 Hb_006618_050 0.0954992015 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
11 Hb_003020_030 0.0955840392 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
12 Hb_001789_040 0.1005297314 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
13 Hb_001244_150 0.1024204842 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
14 Hb_002631_250 0.1030011074 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
15 Hb_000099_160 0.1032660886 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
16 Hb_005801_020 0.1041153014 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
17 Hb_000568_050 0.1042037612 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
18 Hb_000714_040 0.1045470975 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
19 Hb_002233_130 0.1055917759 - - transporter, putative [Ricinus communis]
20 Hb_000679_020 0.1078824614 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_280 Hb_001623_280 Hb_000815_170 Hb_000815_170 Hb_001623_280--Hb_000815_170 Hb_000608_300 Hb_000608_300 Hb_001623_280--Hb_000608_300 Hb_026053_040 Hb_026053_040 Hb_001623_280--Hb_026053_040 Hb_000025_270 Hb_000025_270 Hb_001623_280--Hb_000025_270 Hb_004306_030 Hb_004306_030 Hb_001623_280--Hb_004306_030 Hb_004724_410 Hb_004724_410 Hb_001623_280--Hb_004724_410 Hb_156279_010 Hb_156279_010 Hb_000815_170--Hb_156279_010 Hb_005801_020 Hb_005801_020 Hb_000815_170--Hb_005801_020 Hb_135572_010 Hb_135572_010 Hb_000815_170--Hb_135572_010 Hb_005250_030 Hb_005250_030 Hb_000815_170--Hb_005250_030 Hb_000714_040 Hb_000714_040 Hb_000815_170--Hb_000714_040 Hb_000608_300--Hb_004306_030 Hb_001789_040 Hb_001789_040 Hb_000608_300--Hb_001789_040 Hb_000568_050 Hb_000568_050 Hb_000608_300--Hb_000568_050 Hb_002600_060 Hb_002600_060 Hb_000608_300--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_000608_300--Hb_005211_020 Hb_012055_110 Hb_012055_110 Hb_000608_300--Hb_012055_110 Hb_000320_470 Hb_000320_470 Hb_026053_040--Hb_000320_470 Hb_017469_110 Hb_017469_110 Hb_026053_040--Hb_017469_110 Hb_000181_100 Hb_000181_100 Hb_026053_040--Hb_000181_100 Hb_001008_070 Hb_001008_070 Hb_026053_040--Hb_001008_070 Hb_000033_110 Hb_000033_110 Hb_026053_040--Hb_000033_110 Hb_013405_080 Hb_013405_080 Hb_026053_040--Hb_013405_080 Hb_003020_030 Hb_003020_030 Hb_000025_270--Hb_003020_030 Hb_007101_080 Hb_007101_080 Hb_000025_270--Hb_007101_080 Hb_000025_270--Hb_004724_410 Hb_001936_090 Hb_001936_090 Hb_000025_270--Hb_001936_090 Hb_004218_190 Hb_004218_190 Hb_000025_270--Hb_004218_190 Hb_004306_030--Hb_001789_040 Hb_004306_030--Hb_000568_050 Hb_001244_150 Hb_001244_150 Hb_004306_030--Hb_001244_150 Hb_004306_030--Hb_012055_110 Hb_000011_270 Hb_000011_270 Hb_004306_030--Hb_000011_270 Hb_001348_080 Hb_001348_080 Hb_004724_410--Hb_001348_080 Hb_004724_410--Hb_003020_030 Hb_188281_040 Hb_188281_040 Hb_004724_410--Hb_188281_040 Hb_003292_030 Hb_003292_030 Hb_004724_410--Hb_003292_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.1272 39.3495 43.1026 31.9121 63.4856 40.8675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3714 24.4004 27.6131 65.156 109.23

CAGE analysis