Hb_000025_270

Information

Type -
Description -
Location Contig25: 241221-248405
Sequence    

Annotation

kegg
ID rcu:RCOM_1478990
description multidrug resistance pump, putative
nr
ID XP_012066445.1
description PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
swissprot
ID Q66GI4
description Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1
trembl
ID B9SJ92
description Multidrug resistance pump, putative OS=Ricinus communis GN=RCOM_1478990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26076: 241548-246835 , PASA_asmbl_26077: 246844-247776 , PASA_asmbl_26078: 247369-248199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_270 0.0 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
2 Hb_003020_030 0.0711018661 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
3 Hb_007101_080 0.0824247176 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
4 Hb_004724_410 0.0884909707 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
5 Hb_001623_280 0.0905051262 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
6 Hb_001936_090 0.0947460409 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
7 Hb_004218_190 0.0970814951 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
8 Hb_001347_060 0.0999009337 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
9 Hb_029584_070 0.1001816745 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
10 Hb_000099_160 0.1012070566 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
11 Hb_000613_110 0.1033349079 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
12 Hb_000300_470 0.1035510683 - - PREDICTED: nucleolin-like [Jatropha curcas]
13 Hb_000033_110 0.103931688 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
14 Hb_032920_050 0.1093589058 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
15 Hb_001348_080 0.1102298838 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
16 Hb_188281_040 0.1125929131 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
17 Hb_000922_380 0.112685672 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
18 Hb_000046_540 0.1129380801 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
19 Hb_002025_250 0.113205214 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
20 Hb_041290_020 0.113301212 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_270 Hb_000025_270 Hb_003020_030 Hb_003020_030 Hb_000025_270--Hb_003020_030 Hb_007101_080 Hb_007101_080 Hb_000025_270--Hb_007101_080 Hb_004724_410 Hb_004724_410 Hb_000025_270--Hb_004724_410 Hb_001623_280 Hb_001623_280 Hb_000025_270--Hb_001623_280 Hb_001936_090 Hb_001936_090 Hb_000025_270--Hb_001936_090 Hb_004218_190 Hb_004218_190 Hb_000025_270--Hb_004218_190 Hb_001008_120 Hb_001008_120 Hb_003020_030--Hb_001008_120 Hb_036790_080 Hb_036790_080 Hb_003020_030--Hb_036790_080 Hb_003020_030--Hb_001936_090 Hb_000033_110 Hb_000033_110 Hb_003020_030--Hb_000033_110 Hb_006483_110 Hb_006483_110 Hb_003020_030--Hb_006483_110 Hb_032920_050 Hb_032920_050 Hb_007101_080--Hb_032920_050 Hb_000613_110 Hb_000613_110 Hb_007101_080--Hb_000613_110 Hb_007101_080--Hb_004218_190 Hb_001824_090 Hb_001824_090 Hb_007101_080--Hb_001824_090 Hb_003994_110 Hb_003994_110 Hb_007101_080--Hb_003994_110 Hb_004724_410--Hb_001623_280 Hb_001348_080 Hb_001348_080 Hb_004724_410--Hb_001348_080 Hb_004724_410--Hb_003020_030 Hb_188281_040 Hb_188281_040 Hb_004724_410--Hb_188281_040 Hb_003292_030 Hb_003292_030 Hb_004724_410--Hb_003292_030 Hb_000815_170 Hb_000815_170 Hb_001623_280--Hb_000815_170 Hb_000608_300 Hb_000608_300 Hb_001623_280--Hb_000608_300 Hb_026053_040 Hb_026053_040 Hb_001623_280--Hb_026053_040 Hb_004306_030 Hb_004306_030 Hb_001623_280--Hb_004306_030 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_000720_050 Hb_000720_050 Hb_001936_090--Hb_000720_050 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_000300_470 Hb_000300_470 Hb_004218_190--Hb_000300_470 Hb_000365_240 Hb_000365_240 Hb_004218_190--Hb_000365_240 Hb_005250_010 Hb_005250_010 Hb_004218_190--Hb_005250_010 Hb_000046_540 Hb_000046_540 Hb_004218_190--Hb_000046_540 Hb_011377_040 Hb_011377_040 Hb_004218_190--Hb_011377_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87869 2.27119 4.30106 3.46139 5.04186 4.01852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18087 3.22138 3.35224 5.34102 9.1993

CAGE analysis