Hb_000613_110

Information

Type -
Description -
Location Contig613: 84002-87059
Sequence    

Annotation

kegg
ID rcu:RCOM_0691160
description hypothetical protein
nr
ID XP_012081512.1
description PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18524 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51079: 84001-87019 , PASA_asmbl_51080: 85697-86798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_110 0.0 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
2 Hb_005731_160 0.0703583266 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_002811_010 0.0780668772 - - cysteine synthase, putative [Ricinus communis]
4 Hb_032920_050 0.079046257 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
5 Hb_001449_070 0.0800100676 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003106_190 0.0821268698 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
7 Hb_003994_110 0.0826839088 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
8 Hb_007101_080 0.0846860509 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
9 Hb_000130_320 0.0890235263 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
10 Hb_001824_090 0.0910068312 - - -
11 Hb_003475_020 0.091717138 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
12 Hb_000212_440 0.0921071787 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003376_230 0.0953003263 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
14 Hb_000077_150 0.0961330489 - - PREDICTED: riboflavin synthase [Jatropha curcas]
15 Hb_000648_040 0.0972459266 - - unknown [Populus trichocarpa]
16 Hb_001936_090 0.09748919 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
17 Hb_036790_080 0.098818679 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
18 Hb_002758_010 0.1000737419 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
19 Hb_002232_390 0.1022774753 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
20 Hb_055619_010 0.102647259 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_110 Hb_000613_110 Hb_005731_160 Hb_005731_160 Hb_000613_110--Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_000613_110--Hb_002811_010 Hb_032920_050 Hb_032920_050 Hb_000613_110--Hb_032920_050 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_003106_190 Hb_003106_190 Hb_000613_110--Hb_003106_190 Hb_003994_110 Hb_003994_110 Hb_000613_110--Hb_003994_110 Hb_005731_160--Hb_002811_010 Hb_002758_010 Hb_002758_010 Hb_005731_160--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_005731_160--Hb_000130_320 Hb_055619_010 Hb_055619_010 Hb_005731_160--Hb_055619_010 Hb_000648_040 Hb_000648_040 Hb_005731_160--Hb_000648_040 Hb_002811_010--Hb_055619_010 Hb_002811_010--Hb_003106_190 Hb_000120_290 Hb_000120_290 Hb_002811_010--Hb_000120_290 Hb_000077_150 Hb_000077_150 Hb_002811_010--Hb_000077_150 Hb_036790_080 Hb_036790_080 Hb_032920_050--Hb_036790_080 Hb_032920_050--Hb_000130_320 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_032920_050--Hb_003994_110 Hb_007101_080 Hb_007101_080 Hb_032920_050--Hb_007101_080 Hb_007054_070 Hb_007054_070 Hb_001449_070--Hb_007054_070 Hb_000189_450 Hb_000189_450 Hb_001449_070--Hb_000189_450 Hb_002232_390 Hb_002232_390 Hb_001449_070--Hb_002232_390 Hb_001449_070--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_001449_070--Hb_001214_050 Hb_000359_210 Hb_000359_210 Hb_003106_190--Hb_000359_210 Hb_003106_190--Hb_003994_110 Hb_000684_210 Hb_000684_210 Hb_003106_190--Hb_000684_210 Hb_003106_190--Hb_000077_150 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54173 4.10281 9.43429 9.17002 7.52802 9.30691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.52168 9.06249 5.9425 8.38167 24.5711

CAGE analysis