Hb_003544_010

Information

Type -
Description -
Location Contig3544: 1881-8145
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09340g
description hypothetical protein
nr
ID XP_012070199.1
description PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID E0CTY1
description Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATA PE=3 SV=1
trembl
ID A0A067L6U6
description Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Jatropha curcas GN=GATA PE=3 SV=1
Gene Ontology
ID GO:0016884
description glutamyl-trna amidotransferase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36732: 2142-8134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_010 0.0 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_003994_110 0.0760515693 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
3 Hb_011386_020 0.094158248 - - unnamed protein product [Vitis vinifera]
4 Hb_005282_020 0.1004687172 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
5 Hb_001824_090 0.1033573692 - - -
6 Hb_000012_160 0.1153086726 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
7 Hb_003475_020 0.1203104019 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
8 Hb_003467_030 0.1214498014 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
9 Hb_003106_190 0.1231885902 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
10 Hb_000676_200 0.1239762809 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
11 Hb_000010_290 0.1244846997 - - -
12 Hb_001138_060 0.126385722 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
13 Hb_002811_010 0.1284833175 - - cysteine synthase, putative [Ricinus communis]
14 Hb_003089_020 0.129702162 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
15 Hb_000613_110 0.1319334113 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
16 Hb_000077_150 0.1328891954 - - PREDICTED: riboflavin synthase [Jatropha curcas]
17 Hb_000608_170 0.1334485908 - - F23N19.4 [Arabidopsis thaliana]
18 Hb_002078_340 0.1340150305 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
19 Hb_000300_660 0.1348583596 - - unknown [Glycine max]
20 Hb_009778_060 0.1356774815 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]

Gene co-expression network

sample Hb_003544_010 Hb_003544_010 Hb_003994_110 Hb_003994_110 Hb_003544_010--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003544_010--Hb_011386_020 Hb_005282_020 Hb_005282_020 Hb_003544_010--Hb_005282_020 Hb_001824_090 Hb_001824_090 Hb_003544_010--Hb_001824_090 Hb_000012_160 Hb_000012_160 Hb_003544_010--Hb_000012_160 Hb_003475_020 Hb_003475_020 Hb_003544_010--Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_000613_110 Hb_000613_110 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_003467_030 Hb_003467_030 Hb_011386_020--Hb_003467_030 Hb_011386_020--Hb_003994_110 Hb_006274_050 Hb_006274_050 Hb_011386_020--Hb_006274_050 Hb_000337_050 Hb_000337_050 Hb_011386_020--Hb_000337_050 Hb_000019_200 Hb_000019_200 Hb_011386_020--Hb_000019_200 Hb_000676_200 Hb_000676_200 Hb_005282_020--Hb_000676_200 Hb_005282_020--Hb_000012_160 Hb_000608_170 Hb_000608_170 Hb_005282_020--Hb_000608_170 Hb_002685_060 Hb_002685_060 Hb_005282_020--Hb_002685_060 Hb_000318_130 Hb_000318_130 Hb_005282_020--Hb_000318_130 Hb_001824_090--Hb_000613_110 Hb_007101_080 Hb_007101_080 Hb_001824_090--Hb_007101_080 Hb_002078_340 Hb_002078_340 Hb_001824_090--Hb_002078_340 Hb_003376_230 Hb_003376_230 Hb_001824_090--Hb_003376_230 Hb_000077_150 Hb_000077_150 Hb_001824_090--Hb_000077_150 Hb_002518_120 Hb_002518_120 Hb_000012_160--Hb_002518_120 Hb_007894_220 Hb_007894_220 Hb_000012_160--Hb_007894_220 Hb_000012_160--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_000012_160--Hb_002282_070 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_003475_020--Hb_000676_200 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_003475_020--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.61715 4.44198 6.42729 8.3499 5.3371 8.56358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0919 10.7807 11.7249 12.3323 37.6473

CAGE analysis