Hb_000337_050

Information

Type -
Description -
Location Contig337: 149021-160923
Sequence    

Annotation

kegg
ID rcu:RCOM_0771560
description hypothetical protein
nr
ID XP_012079808.1
description PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067DXB3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018926mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description chloroplast envelope membrane protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35275: 90244-160826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000337_050 0.0 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
2 Hb_000289_110 0.077748374 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
3 Hb_018133_090 0.0809949081 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003086_080 0.1001968809 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
5 Hb_001366_180 0.1008366486 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
6 Hb_005144_050 0.1017264471 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
7 Hb_003020_260 0.1036359233 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
8 Hb_002014_030 0.1040606916 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
9 Hb_001049_110 0.1050690119 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_011360_070 0.10671165 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
11 Hb_001006_020 0.1067728187 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
12 Hb_015941_020 0.1070436962 - - -
13 Hb_000861_020 0.1170434992 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
14 Hb_000116_260 0.117223619 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
15 Hb_018272_020 0.1179691714 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
16 Hb_103118_010 0.1185732085 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
17 Hb_008566_030 0.1187478949 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
18 Hb_003768_030 0.11897874 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
19 Hb_000614_220 0.118993266 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
20 Hb_002811_130 0.1190321397 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000337_050 Hb_000337_050 Hb_000289_110 Hb_000289_110 Hb_000337_050--Hb_000289_110 Hb_018133_090 Hb_018133_090 Hb_000337_050--Hb_018133_090 Hb_003086_080 Hb_003086_080 Hb_000337_050--Hb_003086_080 Hb_001366_180 Hb_001366_180 Hb_000337_050--Hb_001366_180 Hb_005144_050 Hb_005144_050 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260 Hb_001006_020 Hb_001006_020 Hb_000289_110--Hb_001006_020 Hb_000289_110--Hb_001366_180 Hb_002811_130 Hb_002811_130 Hb_000289_110--Hb_002811_130 Hb_000289_110--Hb_005144_050 Hb_002014_030 Hb_002014_030 Hb_000289_110--Hb_002014_030 Hb_001049_110 Hb_001049_110 Hb_018133_090--Hb_001049_110 Hb_011716_130 Hb_011716_130 Hb_018133_090--Hb_011716_130 Hb_015941_020 Hb_015941_020 Hb_018133_090--Hb_015941_020 Hb_018133_090--Hb_002811_130 Hb_103118_010 Hb_103118_010 Hb_018133_090--Hb_103118_010 Hb_008566_030 Hb_008566_030 Hb_003086_080--Hb_008566_030 Hb_003086_080--Hb_005144_050 Hb_001307_030 Hb_001307_030 Hb_003086_080--Hb_001307_030 Hb_024128_020 Hb_024128_020 Hb_003086_080--Hb_024128_020 Hb_000085_400 Hb_000085_400 Hb_003086_080--Hb_000085_400 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_001366_180--Hb_005144_050 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_001366_180--Hb_002014_030 Hb_025098_010 Hb_025098_010 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_005144_050--Hb_024128_020 Hb_018272_020 Hb_018272_020 Hb_003020_260--Hb_018272_020 Hb_003020_260--Hb_000289_110 Hb_003020_260--Hb_002014_030 Hb_000107_150 Hb_000107_150 Hb_003020_260--Hb_000107_150 Hb_003020_260--Hb_001366_180 Hb_003020_260--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6652 1.89544 3.2214 4.6131 2.0685 5.22868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.78795 7.33586 7.35723 3.56485 10.5685

CAGE analysis