Hb_003020_260

Information

Type -
Description -
Location Contig3020: 160932-163645
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25270g
description POPTRDRAFT_172507; hypothetical protein
nr
ID XP_012066947.1
description PREDICTED: metal tolerance protein B [Jatropha curcas]
swissprot
ID Q6DBM8
description Metal tolerance protein B OS=Arabidopsis thaliana GN=MTPB PE=2 SV=1
trembl
ID A0A067LCI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02925 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31862: 162533-162771 , PASA_asmbl_31863: 163022-163385 , PASA_asmbl_31864: 163523-163751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_260 0.0 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
2 Hb_018272_020 0.0839268045 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
3 Hb_000289_110 0.0902756267 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
4 Hb_002014_030 0.0909497786 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
5 Hb_000107_150 0.0931586477 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
6 Hb_001366_180 0.0978639629 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
7 Hb_025098_010 0.099897443 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_005144_050 0.1011282374 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
9 Hb_001240_010 0.1013359173 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
10 Hb_001307_030 0.1017537616 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
11 Hb_001728_060 0.1018954401 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
12 Hb_000159_130 0.1027818245 - - RNA binding protein, putative [Ricinus communis]
13 Hb_005976_080 0.103077739 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
14 Hb_000077_150 0.1032663084 - - PREDICTED: riboflavin synthase [Jatropha curcas]
15 Hb_011457_050 0.1035119333 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
16 Hb_000337_050 0.1036359233 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
17 Hb_001953_080 0.1055509781 - - pseudouridine synthase family protein, partial [Manihot esculenta]
18 Hb_000297_120 0.1063734221 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
19 Hb_006683_070 0.1072484733 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
20 Hb_001006_020 0.107434176 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_260 Hb_003020_260 Hb_018272_020 Hb_018272_020 Hb_003020_260--Hb_018272_020 Hb_000289_110 Hb_000289_110 Hb_003020_260--Hb_000289_110 Hb_002014_030 Hb_002014_030 Hb_003020_260--Hb_002014_030 Hb_000107_150 Hb_000107_150 Hb_003020_260--Hb_000107_150 Hb_001366_180 Hb_001366_180 Hb_003020_260--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_003020_260--Hb_025098_010 Hb_018272_020--Hb_002014_030 Hb_018272_020--Hb_001366_180 Hb_000479_250 Hb_000479_250 Hb_018272_020--Hb_000479_250 Hb_005976_080 Hb_005976_080 Hb_018272_020--Hb_005976_080 Hb_002758_010 Hb_002758_010 Hb_018272_020--Hb_002758_010 Hb_001006_020 Hb_001006_020 Hb_000289_110--Hb_001006_020 Hb_000289_110--Hb_001366_180 Hb_002811_130 Hb_002811_130 Hb_000289_110--Hb_002811_130 Hb_005144_050 Hb_005144_050 Hb_000289_110--Hb_005144_050 Hb_000289_110--Hb_002014_030 Hb_000337_050 Hb_000337_050 Hb_000289_110--Hb_000337_050 Hb_002014_030--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_002014_030--Hb_006274_030 Hb_017987_030 Hb_017987_030 Hb_002014_030--Hb_017987_030 Hb_002014_030--Hb_002811_130 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_001240_010 Hb_001240_010 Hb_000107_150--Hb_001240_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_001728_060 Hb_001728_060 Hb_000107_150--Hb_001728_060 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_001366_180--Hb_006274_030 Hb_001366_180--Hb_005144_050 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_185255_010 Hb_185255_010 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70052 1.09696 1.88841 3.65721 1.54402 2.31555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99096 5.31574 2.9835 3.27684 6.51987

CAGE analysis