Hb_001728_060

Information

Type -
Description -
Location Contig1728: 51446-55913
Sequence    

Annotation

kegg
ID cic:CICLE_v10021569mg
description hypothetical protein
nr
ID XP_012070022.1
description PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L712
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03425 PE=4 SV=1
Gene Ontology
ID GO:0016853
description tryptophan rna-binding attenuator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16392: 56399-56698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001728_060 0.0 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
2 Hb_000159_130 0.0816198216 - - RNA binding protein, putative [Ricinus communis]
3 Hb_000016_080 0.084015845 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
4 Hb_001575_060 0.0857197446 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
5 Hb_001006_020 0.0872505794 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
6 Hb_000107_150 0.0891680042 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
7 Hb_011457_050 0.089569244 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
8 Hb_002609_200 0.0919823691 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_003050_250 0.0923291388 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
10 Hb_003387_070 0.0938311645 - - Acyl-protein thioesterase, putative [Ricinus communis]
11 Hb_002613_020 0.0991461598 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
12 Hb_027459_020 0.0992624946 - - phosphoglycerate mutase, putative [Ricinus communis]
13 Hb_004125_040 0.1013901185 - - -
14 Hb_003020_260 0.1018954401 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
15 Hb_000789_230 0.1019269389 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
16 Hb_001240_010 0.1023404522 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
17 Hb_002183_060 0.1040661071 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
18 Hb_000289_110 0.1046350409 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
19 Hb_003768_030 0.1054402958 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
20 Hb_004324_270 0.1065865143 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]

Gene co-expression network

sample Hb_001728_060 Hb_001728_060 Hb_000159_130 Hb_000159_130 Hb_001728_060--Hb_000159_130 Hb_000016_080 Hb_000016_080 Hb_001728_060--Hb_000016_080 Hb_001575_060 Hb_001575_060 Hb_001728_060--Hb_001575_060 Hb_001006_020 Hb_001006_020 Hb_001728_060--Hb_001006_020 Hb_000107_150 Hb_000107_150 Hb_001728_060--Hb_000107_150 Hb_011457_050 Hb_011457_050 Hb_001728_060--Hb_011457_050 Hb_000159_130--Hb_001006_020 Hb_000289_110 Hb_000289_110 Hb_000159_130--Hb_000289_110 Hb_027459_020 Hb_027459_020 Hb_000159_130--Hb_027459_020 Hb_000159_130--Hb_000107_150 Hb_003020_260 Hb_003020_260 Hb_000159_130--Hb_003020_260 Hb_000789_230 Hb_000789_230 Hb_000016_080--Hb_000789_230 Hb_000254_050 Hb_000254_050 Hb_000016_080--Hb_000254_050 Hb_007065_010 Hb_007065_010 Hb_000016_080--Hb_007065_010 Hb_000735_090 Hb_000735_090 Hb_000016_080--Hb_000735_090 Hb_002613_020 Hb_002613_020 Hb_000016_080--Hb_002613_020 Hb_003050_250 Hb_003050_250 Hb_001575_060--Hb_003050_250 Hb_000403_070 Hb_000403_070 Hb_001575_060--Hb_000403_070 Hb_001240_010 Hb_001240_010 Hb_001575_060--Hb_001240_010 Hb_001575_060--Hb_000107_150 Hb_001892_070 Hb_001892_070 Hb_001575_060--Hb_001892_070 Hb_001006_020--Hb_000289_110 Hb_005144_050 Hb_005144_050 Hb_001006_020--Hb_005144_050 Hb_001366_180 Hb_001366_180 Hb_001006_020--Hb_001366_180 Hb_002183_060 Hb_002183_060 Hb_001006_020--Hb_002183_060 Hb_000421_220 Hb_000421_220 Hb_001006_020--Hb_000421_220 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_000107_150--Hb_001240_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_004324_270 Hb_004324_270 Hb_011457_050--Hb_004324_270 Hb_002408_020 Hb_002408_020 Hb_011457_050--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_011457_050--Hb_003768_030 Hb_000061_210 Hb_000061_210 Hb_011457_050--Hb_000061_210 Hb_000566_120 Hb_000566_120 Hb_011457_050--Hb_000566_120 Hb_011457_050--Hb_002183_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31548 1.12099 4.32133 6.72531 4.26774 4.2865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.95951 13.5008 8.38827 6.67236 10.6083

CAGE analysis