Hb_027459_020

Information

Type -
Description -
Location Contig27459: 23583-28243
Sequence    

Annotation

kegg
ID rcu:RCOM_0601930
description phosphoglycerate mutase, putative (EC:5.4.2.1)
nr
ID XP_002522316.1
description phosphoglycerate mutase, putative [Ricinus communis]
swissprot
ID Q9SCS3
description Phosphoglycerate mutase-like protein 4 OS=Arabidopsis thaliana GN=At3g50520 PE=2 SV=1
trembl
ID B9S8J7
description Phosphoglycerate mutase, putative OS=Ricinus communis GN=RCOM_0601930 PE=4 SV=1
Gene Ontology
ID GO:0004619
description phosphoglycerate mutase-like protein 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28750: 25642-26004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027459_020 0.0 - - phosphoglycerate mutase, putative [Ricinus communis]
2 Hb_003387_070 0.0606269079 - - Acyl-protein thioesterase, putative [Ricinus communis]
3 Hb_002613_020 0.0949954608 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
4 Hb_000159_130 0.0956340504 - - RNA binding protein, putative [Ricinus communis]
5 Hb_001728_060 0.0992624946 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
6 Hb_000431_070 0.1003771784 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
7 Hb_017225_020 0.1004281493 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
8 Hb_000053_020 0.1031581216 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_024650_070 0.1034335937 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
10 Hb_003025_040 0.1096394852 - - PREDICTED: elongin-A [Jatropha curcas]
11 Hb_021576_030 0.1115043101 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
12 Hb_007827_010 0.1115085398 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
13 Hb_003678_020 0.113050448 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001386_040 0.1137113026 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
15 Hb_000329_200 0.1146037247 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
16 Hb_087749_010 0.1147069108 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
17 Hb_002811_130 0.1153699703 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
18 Hb_005847_060 0.1154031306 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
19 Hb_006907_130 0.1154572084 - - unnamed protein product [Coffea canephora]
20 Hb_002183_060 0.1154960188 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027459_020 Hb_027459_020 Hb_003387_070 Hb_003387_070 Hb_027459_020--Hb_003387_070 Hb_002613_020 Hb_002613_020 Hb_027459_020--Hb_002613_020 Hb_000159_130 Hb_000159_130 Hb_027459_020--Hb_000159_130 Hb_001728_060 Hb_001728_060 Hb_027459_020--Hb_001728_060 Hb_000431_070 Hb_000431_070 Hb_027459_020--Hb_000431_070 Hb_017225_020 Hb_017225_020 Hb_027459_020--Hb_017225_020 Hb_003387_070--Hb_001728_060 Hb_003387_070--Hb_017225_020 Hb_003387_070--Hb_002613_020 Hb_027654_050 Hb_027654_050 Hb_003387_070--Hb_027654_050 Hb_003387_070--Hb_000159_130 Hb_002613_020--Hb_000431_070 Hb_007065_010 Hb_007065_010 Hb_002613_020--Hb_007065_010 Hb_087749_010 Hb_087749_010 Hb_002613_020--Hb_087749_010 Hb_000016_080 Hb_000016_080 Hb_002613_020--Hb_000016_080 Hb_007576_170 Hb_007576_170 Hb_002613_020--Hb_007576_170 Hb_033153_060 Hb_033153_060 Hb_002613_020--Hb_033153_060 Hb_001006_020 Hb_001006_020 Hb_000159_130--Hb_001006_020 Hb_000159_130--Hb_001728_060 Hb_000289_110 Hb_000289_110 Hb_000159_130--Hb_000289_110 Hb_000107_150 Hb_000107_150 Hb_000159_130--Hb_000107_150 Hb_003020_260 Hb_003020_260 Hb_000159_130--Hb_003020_260 Hb_001728_060--Hb_000016_080 Hb_001575_060 Hb_001575_060 Hb_001728_060--Hb_001575_060 Hb_001728_060--Hb_001006_020 Hb_001728_060--Hb_000107_150 Hb_011457_050 Hb_011457_050 Hb_001728_060--Hb_011457_050 Hb_000431_070--Hb_007576_170 Hb_000045_310 Hb_000045_310 Hb_000431_070--Hb_000045_310 Hb_001279_080 Hb_001279_080 Hb_000431_070--Hb_001279_080 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_000431_070--Hb_087749_010 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_017225_020--Hb_027654_050 Hb_017225_020--Hb_007576_170 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_017225_020--Hb_010361_010 Hb_028872_080 Hb_028872_080 Hb_017225_020--Hb_028872_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.87468 1.58509 7.33632 6.77824 6.60876 5.65165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6326 13.4169 7.99819 9.75675 11.0117

CAGE analysis