Hb_005446_010

Information

Type -
Description -
Location Contig5446: 21199-29307
Sequence    

Annotation

kegg
ID rcu:RCOM_1192570
description Coiled-coil domain-containing protein, putative
nr
ID XP_012065308.1
description PREDICTED: zinc finger protein 830 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23034 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47947: 21208-29146 , PASA_asmbl_47948: 25610-25985 , PASA_asmbl_47949: 25177-25394 , PASA_asmbl_47950: 22731-22966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005446_010 0.0 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
2 Hb_017225_020 0.0639424534 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
3 Hb_004324_270 0.0709525535 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
4 Hb_000827_050 0.0795366416 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
5 Hb_011512_040 0.0831468589 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
6 Hb_000327_060 0.0851720238 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
7 Hb_003768_030 0.0908350775 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
8 Hb_000258_260 0.092528729 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
9 Hb_002408_020 0.0928775576 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
10 Hb_000571_020 0.093151052 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
11 Hb_000205_090 0.093155613 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
12 Hb_003622_030 0.0936364259 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
13 Hb_010098_050 0.0937031371 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
14 Hb_000046_050 0.0949836625 - - PREDICTED: LEC14B homolog [Jatropha curcas]
15 Hb_000962_040 0.0951336037 - - heat shock protein binding protein, putative [Ricinus communis]
16 Hb_002226_060 0.0952035804 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
17 Hb_027654_050 0.0956057568 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
18 Hb_000329_200 0.096100979 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
19 Hb_000169_040 0.0983090869 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
20 Hb_000329_760 0.0988434793 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]

Gene co-expression network

sample Hb_005446_010 Hb_005446_010 Hb_017225_020 Hb_017225_020 Hb_005446_010--Hb_017225_020 Hb_004324_270 Hb_004324_270 Hb_005446_010--Hb_004324_270 Hb_000827_050 Hb_000827_050 Hb_005446_010--Hb_000827_050 Hb_011512_040 Hb_011512_040 Hb_005446_010--Hb_011512_040 Hb_000327_060 Hb_000327_060 Hb_005446_010--Hb_000327_060 Hb_003768_030 Hb_003768_030 Hb_005446_010--Hb_003768_030 Hb_027654_050 Hb_027654_050 Hb_017225_020--Hb_027654_050 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_017225_020--Hb_010361_010 Hb_028872_080 Hb_028872_080 Hb_017225_020--Hb_028872_080 Hb_011457_050 Hb_011457_050 Hb_004324_270--Hb_011457_050 Hb_000046_050 Hb_000046_050 Hb_004324_270--Hb_000046_050 Hb_002408_020 Hb_002408_020 Hb_004324_270--Hb_002408_020 Hb_004324_270--Hb_003768_030 Hb_002183_060 Hb_002183_060 Hb_004324_270--Hb_002183_060 Hb_000236_040 Hb_000236_040 Hb_000827_050--Hb_000236_040 Hb_050514_010 Hb_050514_010 Hb_000827_050--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000827_050--Hb_004109_170 Hb_000260_030 Hb_000260_030 Hb_000827_050--Hb_000260_030 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000205_090 Hb_000205_090 Hb_000827_050--Hb_000205_090 Hb_011512_040--Hb_017225_020 Hb_000853_190 Hb_000853_190 Hb_011512_040--Hb_000853_190 Hb_000419_070 Hb_000419_070 Hb_011512_040--Hb_000419_070 Hb_003849_150 Hb_003849_150 Hb_011512_040--Hb_003849_150 Hb_010883_050 Hb_010883_050 Hb_011512_040--Hb_010883_050 Hb_158445_010 Hb_158445_010 Hb_000327_060--Hb_158445_010 Hb_004143_150 Hb_004143_150 Hb_000327_060--Hb_004143_150 Hb_001545_160 Hb_001545_160 Hb_000327_060--Hb_001545_160 Hb_005162_060 Hb_005162_060 Hb_000327_060--Hb_005162_060 Hb_002676_090 Hb_002676_090 Hb_000327_060--Hb_002676_090 Hb_012423_030 Hb_012423_030 Hb_000327_060--Hb_012423_030 Hb_000053_020 Hb_000053_020 Hb_003768_030--Hb_000053_020 Hb_001195_200 Hb_001195_200 Hb_003768_030--Hb_001195_200 Hb_008453_030 Hb_008453_030 Hb_003768_030--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_003768_030--Hb_001489_080 Hb_003768_030--Hb_012423_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81793 6.41413 14.5184 8.66331 10.5697 7.76395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8845 29.6606 21.3373 14.9584 16.0619

CAGE analysis