Hb_000853_190

Information

Type -
Description -
Location Contig853: 142577-148448
Sequence    

Annotation

kegg
ID rcu:RCOM_1179900
description mitochondrial carrier protein, putative
nr
ID XP_002523136.1
description mitochondrial carrier protein, putative [Ricinus communis]
swissprot
ID O22261
description Nicotinamide adenine dinucleotide transporter 1, chloroplastic OS=Arabidopsis thaliana GN=NDT1 PE=1 SV=2
trembl
ID B9SAW7
description Mitochondrial carrier protein, putative OS=Ricinus communis GN=RCOM_1179900 PE=3 SV=1
Gene Ontology
ID GO:0005739
description nicotinamide adenine dinucleotide transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60481: 143058-143711 , PASA_asmbl_60482: 143712-144138 , PASA_asmbl_60483: 144638-148412
cDNA
(Sanger)
(ID:Location)		 051_F17.ab1: 144676-148412 , 051_K08.ab1: 144638-148412

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_190 0.0 - - mitochondrial carrier protein, putative [Ricinus communis]
2 Hb_000436_130 0.0826709772 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
3 Hb_011512_040 0.0855133331 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
4 Hb_000962_040 0.0900936427 - - heat shock protein binding protein, putative [Ricinus communis]
5 Hb_000614_220 0.0948485873 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
6 Hb_027654_060 0.0953853901 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
7 Hb_002871_190 0.0957138672 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
8 Hb_001946_330 0.096281104 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
9 Hb_002408_020 0.0974466534 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
10 Hb_002799_110 0.0984453694 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
11 Hb_000733_180 0.0987711343 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
12 Hb_019113_020 0.0994102098 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
13 Hb_003622_030 0.099486221 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
14 Hb_009339_030 0.1011986132 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
15 Hb_018133_090 0.1012621941 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004324_270 0.1032762789 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
17 Hb_000827_050 0.1046034111 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_002503_020 0.1061898161 - - Phosphatase 2C family protein, putative [Theobroma cacao]
19 Hb_012799_170 0.1074722264 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
20 Hb_005446_010 0.1081190234 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_190 Hb_000853_190 Hb_000436_130 Hb_000436_130 Hb_000853_190--Hb_000436_130 Hb_011512_040 Hb_011512_040 Hb_000853_190--Hb_011512_040 Hb_000962_040 Hb_000962_040 Hb_000853_190--Hb_000962_040 Hb_000614_220 Hb_000614_220 Hb_000853_190--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_000853_190--Hb_027654_060 Hb_002871_190 Hb_002871_190 Hb_000853_190--Hb_002871_190 Hb_009339_030 Hb_009339_030 Hb_000436_130--Hb_009339_030 Hb_010883_050 Hb_010883_050 Hb_000436_130--Hb_010883_050 Hb_000733_180 Hb_000733_180 Hb_000436_130--Hb_000733_180 Hb_003697_040 Hb_003697_040 Hb_000436_130--Hb_003697_040 Hb_001013_030 Hb_001013_030 Hb_000436_130--Hb_001013_030 Hb_003053_020 Hb_003053_020 Hb_000436_130--Hb_003053_020 Hb_017225_020 Hb_017225_020 Hb_011512_040--Hb_017225_020 Hb_005446_010 Hb_005446_010 Hb_011512_040--Hb_005446_010 Hb_000419_070 Hb_000419_070 Hb_011512_040--Hb_000419_070 Hb_003849_150 Hb_003849_150 Hb_011512_040--Hb_003849_150 Hb_011512_040--Hb_010883_050 Hb_004324_270 Hb_004324_270 Hb_000962_040--Hb_004324_270 Hb_000962_040--Hb_000614_220 Hb_000962_040--Hb_027654_060 Hb_011909_100 Hb_011909_100 Hb_000962_040--Hb_011909_100 Hb_028486_030 Hb_028486_030 Hb_000962_040--Hb_028486_030 Hb_002799_110 Hb_002799_110 Hb_000614_220--Hb_002799_110 Hb_000614_220--Hb_027654_060 Hb_000614_160 Hb_000614_160 Hb_000614_220--Hb_000614_160 Hb_000510_290 Hb_000510_290 Hb_000614_220--Hb_000510_290 Hb_012675_050 Hb_012675_050 Hb_000614_220--Hb_012675_050 Hb_012114_070 Hb_012114_070 Hb_000614_220--Hb_012114_070 Hb_082609_010 Hb_082609_010 Hb_027654_060--Hb_082609_010 Hb_027654_060--Hb_002799_110 Hb_003020_220 Hb_003020_220 Hb_027654_060--Hb_003020_220 Hb_027654_060--Hb_028486_030 Hb_003728_060 Hb_003728_060 Hb_002871_190--Hb_003728_060 Hb_026889_030 Hb_026889_030 Hb_002871_190--Hb_026889_030 Hb_050514_010 Hb_050514_010 Hb_002871_190--Hb_050514_010 Hb_010361_010 Hb_010361_010 Hb_002871_190--Hb_010361_010 Hb_002600_090 Hb_002600_090 Hb_002871_190--Hb_002600_090 Hb_000827_050 Hb_000827_050 Hb_002871_190--Hb_000827_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0296 6.35878 19.6316 15.5307 10.7191 11.0675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9351 35.8339 37.8573 11.7427 28.952

CAGE analysis