Hb_026889_030

Information

Type -
Description -
Location Contig26889: 41218-43130
Sequence    

Annotation

kegg
ID rcu:RCOM_1274940
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002528238.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9FGK5
description Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1
trembl
ID B9SQG9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1274940 PE=3 SV=1
Gene Ontology
ID GO:0005774
description ras-related protein raba5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28094: 41351-43014
cDNA
(Sanger)
(ID:Location)		 006_C12.ab1: 41351-42903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026889_030 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_028872_080 0.0583478752 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
3 Hb_004889_020 0.0656545712 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
4 Hb_008071_020 0.072124233 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
5 Hb_010361_010 0.0721968343 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
6 Hb_000827_050 0.0734027269 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
7 Hb_000676_390 0.0735416579 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
8 Hb_002871_190 0.0759744893 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
9 Hb_000045_310 0.076571994 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
10 Hb_003728_060 0.0781636305 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
11 Hb_002540_080 0.0797636821 - - cysteine-type peptidase, putative [Ricinus communis]
12 Hb_000317_390 0.0803138602 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
13 Hb_157022_010 0.0815806702 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
14 Hb_004157_020 0.0821487601 - - PREDICTED: histone H2B-like [Gossypium raimondii]
15 Hb_148121_040 0.0829267349 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
16 Hb_000175_340 0.0840070004 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
17 Hb_005054_210 0.0846459914 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
18 Hb_118419_010 0.0846974504 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_006831_120 0.08505571 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
20 Hb_004109_170 0.0863385617 - - PREDICTED: probable ribokinase [Jatropha curcas]

Gene co-expression network

sample Hb_026889_030 Hb_026889_030 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_004889_020 Hb_004889_020 Hb_026889_030--Hb_004889_020 Hb_008071_020 Hb_008071_020 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050 Hb_000676_390 Hb_000676_390 Hb_026889_030--Hb_000676_390 Hb_006831_120 Hb_006831_120 Hb_028872_080--Hb_006831_120 Hb_017225_020 Hb_017225_020 Hb_028872_080--Hb_017225_020 Hb_028872_080--Hb_010361_010 Hb_118419_010 Hb_118419_010 Hb_028872_080--Hb_118419_010 Hb_001604_060 Hb_001604_060 Hb_028872_080--Hb_001604_060 Hb_004157_020 Hb_004157_020 Hb_004889_020--Hb_004157_020 Hb_006326_040 Hb_006326_040 Hb_004889_020--Hb_006326_040 Hb_157022_010 Hb_157022_010 Hb_004889_020--Hb_157022_010 Hb_004889_020--Hb_000676_390 Hb_004889_020--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_000329_200 Hb_000329_200 Hb_010361_010--Hb_000329_200 Hb_000566_120 Hb_000566_120 Hb_010361_010--Hb_000566_120 Hb_024650_070 Hb_024650_070 Hb_010361_010--Hb_024650_070 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_010361_010--Hb_000045_310 Hb_000236_040 Hb_000236_040 Hb_000827_050--Hb_000236_040 Hb_050514_010 Hb_050514_010 Hb_000827_050--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000827_050--Hb_004109_170 Hb_000260_030 Hb_000260_030 Hb_000827_050--Hb_000260_030 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000205_090 Hb_000205_090 Hb_000827_050--Hb_000205_090 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_000676_390--Hb_008071_020 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.19687 4.14902 17.2256 14.0071 8.97948 8.77482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2022 24.5794 20.251 8.00746 10.484

CAGE analysis