Hb_000329_200

Information

Type -
Description -
Location Contig329: 112104-113728
Sequence    

Annotation

kegg
ID cam:101494650
description uncharacterized LOC101494650
nr
ID XP_012078760.1
description PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B2P4L7
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_043563 PE=4 SV=1
Gene Ontology
ID GO:0000139
description golgi snap receptor complex member 1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34506: 112194-116724 , PASA_asmbl_34507: 112194-118301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_200 0.0 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
2 Hb_010361_010 0.0581709135 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
3 Hb_024650_070 0.0633798276 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
4 Hb_001662_150 0.0667079834 - - Scaffold attachment factor B1 [Medicago truncatula]
5 Hb_001604_060 0.0710197961 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
6 Hb_017225_020 0.0711232154 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
7 Hb_000656_240 0.0723051924 - - proteasome subunit alpha type, putative [Ricinus communis]
8 Hb_003018_010 0.073478879 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
9 Hb_002226_060 0.0755561242 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
10 Hb_002056_050 0.0774270087 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
11 Hb_001105_030 0.0789787686 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
12 Hb_000827_050 0.0799659238 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_001221_210 0.0803514266 - - thiF family protein [Populus trichocarpa]
14 Hb_000836_470 0.0803874171 - - -
15 Hb_032264_070 0.0808215188 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
16 Hb_001633_050 0.0814959576 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
17 Hb_001279_080 0.0837332189 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
18 Hb_000580_090 0.0847996176 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
19 Hb_000059_370 0.0848384615 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
20 Hb_007576_170 0.0858025 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000329_200 Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_000329_200--Hb_010361_010 Hb_024650_070 Hb_024650_070 Hb_000329_200--Hb_024650_070 Hb_001662_150 Hb_001662_150 Hb_000329_200--Hb_001662_150 Hb_001604_060 Hb_001604_060 Hb_000329_200--Hb_001604_060 Hb_017225_020 Hb_017225_020 Hb_000329_200--Hb_017225_020 Hb_000656_240 Hb_000656_240 Hb_000329_200--Hb_000656_240 Hb_000566_120 Hb_000566_120 Hb_010361_010--Hb_000566_120 Hb_010361_010--Hb_024650_070 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_000045_310 Hb_000045_310 Hb_010361_010--Hb_000045_310 Hb_024650_070--Hb_000045_310 Hb_005551_040 Hb_005551_040 Hb_024650_070--Hb_005551_040 Hb_024650_070--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_024650_070--Hb_028396_010 Hb_007163_070 Hb_007163_070 Hb_001662_150--Hb_007163_070 Hb_003226_140 Hb_003226_140 Hb_001662_150--Hb_003226_140 Hb_005697_060 Hb_005697_060 Hb_001662_150--Hb_005697_060 Hb_001157_020 Hb_001157_020 Hb_001662_150--Hb_001157_020 Hb_005306_170 Hb_005306_170 Hb_001662_150--Hb_005306_170 Hb_001268_420 Hb_001268_420 Hb_001604_060--Hb_001268_420 Hb_001604_060--Hb_017225_020 Hb_004195_270 Hb_004195_270 Hb_001604_060--Hb_004195_270 Hb_118419_010 Hb_118419_010 Hb_001604_060--Hb_118419_010 Hb_028872_080 Hb_028872_080 Hb_001604_060--Hb_028872_080 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_027654_050 Hb_027654_050 Hb_017225_020--Hb_027654_050 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_017225_020--Hb_010361_010 Hb_017225_020--Hb_028872_080 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93512 1.0799 4.12523 2.84785 3.019 3.41244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.99637 7.13376 4.12176 3.42918 3.01517

CAGE analysis