Hb_005306_170

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5306: 103265-111540
Sequence    

Annotation

kegg
ID rcu:RCOM_0654820
description transcription factor, putative
nr
ID XP_012068940.1
description PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
swissprot
ID F4IEY4
description Telomere repeat-binding factor 5 OS=Arabidopsis thaliana GN=At1g72740 PE=2 SV=1
trembl
ID A0A067KX39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24740 PE=4 SV=1
Gene Ontology
ID GO:0000786
description telomere repeat-binding factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47371: 103143-108558 , PASA_asmbl_47372: 109426-111397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_170 0.0 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
2 Hb_012725_050 0.0687931962 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
3 Hb_001662_150 0.0715473265 - - Scaffold attachment factor B1 [Medicago truncatula]
4 Hb_028227_020 0.080868137 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
5 Hb_001157_020 0.0812921727 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
6 Hb_000329_140 0.0815809646 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
7 Hb_000486_010 0.0822294104 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
8 Hb_032258_030 0.082609955 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
9 Hb_003398_130 0.0867922516 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
10 Hb_002284_090 0.0873570194 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
11 Hb_007163_070 0.088600978 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
12 Hb_005847_060 0.0901070974 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
13 Hb_008648_010 0.0927690911 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
14 Hb_118707_030 0.0932284798 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
15 Hb_004837_030 0.0949922538 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
16 Hb_054865_120 0.0956287046 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
17 Hb_009838_080 0.0967610996 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_002205_070 0.097073508 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
19 Hb_002214_040 0.0971990166 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_000046_280 0.0987602386 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005306_170 Hb_005306_170 Hb_012725_050 Hb_012725_050 Hb_005306_170--Hb_012725_050 Hb_001662_150 Hb_001662_150 Hb_005306_170--Hb_001662_150 Hb_028227_020 Hb_028227_020 Hb_005306_170--Hb_028227_020 Hb_001157_020 Hb_001157_020 Hb_005306_170--Hb_001157_020 Hb_000329_140 Hb_000329_140 Hb_005306_170--Hb_000329_140 Hb_000486_010 Hb_000486_010 Hb_005306_170--Hb_000486_010 Hb_001105_030 Hb_001105_030 Hb_012725_050--Hb_001105_030 Hb_012725_050--Hb_001157_020 Hb_001821_010 Hb_001821_010 Hb_012725_050--Hb_001821_010 Hb_012725_050--Hb_028227_020 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_007163_070 Hb_007163_070 Hb_001662_150--Hb_007163_070 Hb_003226_140 Hb_003226_140 Hb_001662_150--Hb_003226_140 Hb_000329_200 Hb_000329_200 Hb_001662_150--Hb_000329_200 Hb_005697_060 Hb_005697_060 Hb_001662_150--Hb_005697_060 Hb_001662_150--Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_028227_020--Hb_005697_060 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_001157_020--Hb_001105_030 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_002728_070 Hb_002728_070 Hb_000329_140--Hb_002728_070 Hb_000272_020 Hb_000272_020 Hb_000329_140--Hb_000272_020 Hb_000365_120 Hb_000365_120 Hb_000329_140--Hb_000365_120 Hb_004097_050 Hb_004097_050 Hb_000329_140--Hb_004097_050 Hb_007632_030 Hb_007632_030 Hb_000329_140--Hb_007632_030 Hb_000300_610 Hb_000300_610 Hb_000486_010--Hb_000300_610 Hb_063090_010 Hb_063090_010 Hb_000486_010--Hb_063090_010 Hb_003333_060 Hb_003333_060 Hb_000486_010--Hb_003333_060 Hb_000627_030 Hb_000627_030 Hb_000486_010--Hb_000627_030 Hb_000486_010--Hb_000329_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92468 2.58164 6.18133 3.13004 8.36343 10.0537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.664 11.7306 6.50285 5.83202 7.12649

CAGE analysis