Hb_003333_060

Information

Type -
Description -
Location Contig3333: 55724-72989
Sequence    

Annotation

kegg
ID rcu:RCOM_1205550
description hypothetical protein
nr
ID XP_012065263.1
description PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T6H1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1205550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003333_060 0.0 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
2 Hb_008406_190 0.0752324987 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
3 Hb_000103_080 0.077438293 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
4 Hb_010423_040 0.0791114721 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
5 Hb_000373_280 0.0834670564 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
6 Hb_063090_010 0.0836638422 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_000486_010 0.0864370284 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
8 Hb_009117_030 0.0882099528 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
9 Hb_105123_010 0.0909461483 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
10 Hb_000959_260 0.0931916827 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
11 Hb_012490_030 0.0937971066 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
12 Hb_000373_240 0.0944243573 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
13 Hb_000889_020 0.0961657835 - - ribosome biogenesis protein brix, putative [Ricinus communis]
14 Hb_000103_180 0.0963590949 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
15 Hb_001789_240 0.0972085365 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
16 Hb_000103_090 0.0973537921 - - PREDICTED: protein RDM1 [Jatropha curcas]
17 Hb_007426_030 0.0974420143 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
18 Hb_000120_730 0.0985407006 - - hypothetical protein POPTR_0005s033002g, partial [Populus trichocarpa]
19 Hb_004182_040 0.098870685 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
20 Hb_155159_030 0.0998718764 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003333_060 Hb_003333_060 Hb_008406_190 Hb_008406_190 Hb_003333_060--Hb_008406_190 Hb_000103_080 Hb_000103_080 Hb_003333_060--Hb_000103_080 Hb_010423_040 Hb_010423_040 Hb_003333_060--Hb_010423_040 Hb_000373_280 Hb_000373_280 Hb_003333_060--Hb_000373_280 Hb_063090_010 Hb_063090_010 Hb_003333_060--Hb_063090_010 Hb_000486_010 Hb_000486_010 Hb_003333_060--Hb_000486_010 Hb_007017_030 Hb_007017_030 Hb_008406_190--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_008406_190--Hb_002893_080 Hb_008406_190--Hb_000103_080 Hb_008406_190--Hb_010423_040 Hb_001828_190 Hb_001828_190 Hb_008406_190--Hb_001828_190 Hb_033594_120 Hb_033594_120 Hb_000103_080--Hb_033594_120 Hb_000272_020 Hb_000272_020 Hb_000103_080--Hb_000272_020 Hb_000103_080--Hb_010423_040 Hb_000960_060 Hb_000960_060 Hb_000103_080--Hb_000960_060 Hb_002296_040 Hb_002296_040 Hb_010423_040--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_010423_040--Hb_005615_080 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_003226_180 Hb_003226_180 Hb_000373_280--Hb_003226_180 Hb_018838_030 Hb_018838_030 Hb_000373_280--Hb_018838_030 Hb_000345_170 Hb_000345_170 Hb_000373_280--Hb_000345_170 Hb_001545_120 Hb_001545_120 Hb_000373_280--Hb_001545_120 Hb_000120_730 Hb_000120_730 Hb_000373_280--Hb_000120_730 Hb_002890_020 Hb_002890_020 Hb_000373_280--Hb_002890_020 Hb_002079_010 Hb_002079_010 Hb_063090_010--Hb_002079_010 Hb_001789_240 Hb_001789_240 Hb_063090_010--Hb_001789_240 Hb_063090_010--Hb_018838_030 Hb_005993_040 Hb_005993_040 Hb_063090_010--Hb_005993_040 Hb_000853_170 Hb_000853_170 Hb_063090_010--Hb_000853_170 Hb_006400_030 Hb_006400_030 Hb_063090_010--Hb_006400_030 Hb_000300_610 Hb_000300_610 Hb_000486_010--Hb_000300_610 Hb_000486_010--Hb_063090_010 Hb_005306_170 Hb_005306_170 Hb_000486_010--Hb_005306_170 Hb_000627_030 Hb_000627_030 Hb_000486_010--Hb_000627_030 Hb_000329_140 Hb_000329_140 Hb_000486_010--Hb_000329_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88417 0.749076 0.767543 1.19847 2.15484 3.73839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43487 2.90214 1.51755 2.05485 1.68887

CAGE analysis