Hb_008406_190

Information

Type -
Description -
Location Contig8406: 129235-132562
Sequence    

Annotation

kegg
ID cit:102629247
description RNA polymerase II subunit 5-mediating protein homolog
nr
ID XP_012088258.1
description PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
swissprot
ID Q54HG4
description RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2
trembl
ID W9QYL8
description RNA polymerase II subunit 5-mediating-like protein OS=Morus notabilis GN=L484_010330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60129: 129306-130568 , PASA_asmbl_60130: 130581-130842 , PASA_asmbl_60131: 130896-132395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_190 0.0 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
2 Hb_007017_030 0.0627628042 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
3 Hb_002893_080 0.0649617809 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
4 Hb_000103_080 0.0697352338 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
5 Hb_003333_060 0.0752324987 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
6 Hb_010423_040 0.0763610669 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
7 Hb_001828_190 0.0770991713 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
8 Hb_003633_030 0.0779343097 - - f-actin capping protein alpha, putative [Ricinus communis]
9 Hb_033594_120 0.0821790708 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
10 Hb_000023_220 0.0824051137 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
11 Hb_000054_090 0.0831931282 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001579_270 0.0847725284 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
13 Hb_000599_300 0.0860311838 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
14 Hb_007672_060 0.0867587227 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
15 Hb_002473_130 0.088195221 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
16 Hb_002271_020 0.0884857722 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
17 Hb_000960_060 0.0890841452 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
18 Hb_003525_010 0.0896430491 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
19 Hb_000291_220 0.0900672625 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
20 Hb_027472_150 0.0920354438 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]

Gene co-expression network

sample Hb_008406_190 Hb_008406_190 Hb_007017_030 Hb_007017_030 Hb_008406_190--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_008406_190--Hb_002893_080 Hb_000103_080 Hb_000103_080 Hb_008406_190--Hb_000103_080 Hb_003333_060 Hb_003333_060 Hb_008406_190--Hb_003333_060 Hb_010423_040 Hb_010423_040 Hb_008406_190--Hb_010423_040 Hb_001828_190 Hb_001828_190 Hb_008406_190--Hb_001828_190 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_000599_300 Hb_000599_300 Hb_002893_080--Hb_000599_300 Hb_002893_080--Hb_003633_030 Hb_000116_440 Hb_000116_440 Hb_002893_080--Hb_000116_440 Hb_001579_220 Hb_001579_220 Hb_002893_080--Hb_001579_220 Hb_000103_080--Hb_003333_060 Hb_033594_120 Hb_033594_120 Hb_000103_080--Hb_033594_120 Hb_000272_020 Hb_000272_020 Hb_000103_080--Hb_000272_020 Hb_000103_080--Hb_010423_040 Hb_000960_060 Hb_000960_060 Hb_000103_080--Hb_000960_060 Hb_003333_060--Hb_010423_040 Hb_000373_280 Hb_000373_280 Hb_003333_060--Hb_000373_280 Hb_063090_010 Hb_063090_010 Hb_003333_060--Hb_063090_010 Hb_000486_010 Hb_000486_010 Hb_003333_060--Hb_000486_010 Hb_002296_040 Hb_002296_040 Hb_010423_040--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_010423_040--Hb_005615_080 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_001090_040 Hb_001090_040 Hb_001828_190--Hb_001090_040 Hb_003525_010 Hb_003525_010 Hb_001828_190--Hb_003525_010 Hb_002226_070 Hb_002226_070 Hb_001828_190--Hb_002226_070 Hb_007691_030 Hb_007691_030 Hb_001828_190--Hb_007691_030 Hb_000092_170 Hb_000092_170 Hb_001828_190--Hb_000092_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.09067 2.42765 2.70001 5.63006 7.33201 8.71644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.94106 8.59612 3.82052 6.37153 4.7538

CAGE analysis