Hb_001090_040

Information

Type -
Description -
Location Contig1090: 48238-55247
Sequence    

Annotation

kegg
ID rcu:RCOM_1032880
description Transmembrane protein 50A, putative
nr
ID XP_002513836.1
description Transmembrane protein 50A, putative [Ricinus communis]
swissprot
ID Q54T60
description Transmembrane protein 50 homolog OS=Dictyostelium discoideum GN=tmem50 PE=3 SV=1
trembl
ID B9RJB7
description Transmembrane protein 50A, putative OS=Ricinus communis GN=RCOM_1032880 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 50 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02738: 49676-55039
cDNA
(Sanger)
(ID:Location)		 015_M12.ab1: 49750-54964

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001090_040 0.0 - - Transmembrane protein 50A, putative [Ricinus communis]
2 Hb_001828_190 0.0639855764 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
3 Hb_010655_010 0.0837111048 - - Cycloartenol synthase, putative [Ricinus communis]
4 Hb_000960_060 0.0881549319 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
5 Hb_001935_130 0.0886857831 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
6 Hb_000329_030 0.0895464879 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
7 Hb_000331_450 0.0919268244 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
8 Hb_000363_500 0.0924544554 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
9 Hb_001575_090 0.0943902756 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
10 Hb_009775_020 0.0955773661 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
11 Hb_004032_010 0.0958017572 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
12 Hb_003847_080 0.0961328821 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
13 Hb_000451_010 0.0962468035 - - secretory carrier membrane protein, putative [Ricinus communis]
14 Hb_007059_010 0.0962575171 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
15 Hb_002078_150 0.0966065057 - - protein with unknown function [Ricinus communis]
16 Hb_009557_070 0.0966327385 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010180_010 0.0969045389 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
18 Hb_002284_240 0.0970343056 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
19 Hb_000056_260 0.0983144663 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
20 Hb_000103_090 0.0989212898 - - PREDICTED: protein RDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_001090_040 Hb_001090_040 Hb_001828_190 Hb_001828_190 Hb_001090_040--Hb_001828_190 Hb_010655_010 Hb_010655_010 Hb_001090_040--Hb_010655_010 Hb_000960_060 Hb_000960_060 Hb_001090_040--Hb_000960_060 Hb_001935_130 Hb_001935_130 Hb_001090_040--Hb_001935_130 Hb_000329_030 Hb_000329_030 Hb_001090_040--Hb_000329_030 Hb_000331_450 Hb_000331_450 Hb_001090_040--Hb_000331_450 Hb_007017_030 Hb_007017_030 Hb_001828_190--Hb_007017_030 Hb_003525_010 Hb_003525_010 Hb_001828_190--Hb_003525_010 Hb_002226_070 Hb_002226_070 Hb_001828_190--Hb_002226_070 Hb_007691_030 Hb_007691_030 Hb_001828_190--Hb_007691_030 Hb_000092_170 Hb_000092_170 Hb_001828_190--Hb_000092_170 Hb_132835_010 Hb_132835_010 Hb_010655_010--Hb_132835_010 Hb_032264_110 Hb_032264_110 Hb_010655_010--Hb_032264_110 Hb_000451_010 Hb_000451_010 Hb_010655_010--Hb_000451_010 Hb_004440_090 Hb_004440_090 Hb_010655_010--Hb_004440_090 Hb_004907_080 Hb_004907_080 Hb_010655_010--Hb_004907_080 Hb_005731_050 Hb_005731_050 Hb_000960_060--Hb_005731_050 Hb_003428_030 Hb_003428_030 Hb_000960_060--Hb_003428_030 Hb_033594_120 Hb_033594_120 Hb_000960_060--Hb_033594_120 Hb_000960_060--Hb_001828_190 Hb_028227_020 Hb_028227_020 Hb_000960_060--Hb_028227_020 Hb_000093_160 Hb_000093_160 Hb_000960_060--Hb_000093_160 Hb_000056_260 Hb_000056_260 Hb_001935_130--Hb_000056_260 Hb_001935_130--Hb_000960_060 Hb_002671_100 Hb_002671_100 Hb_001935_130--Hb_002671_100 Hb_158062_010 Hb_158062_010 Hb_001935_130--Hb_158062_010 Hb_024714_100 Hb_024714_100 Hb_001935_130--Hb_024714_100 Hb_009557_070 Hb_009557_070 Hb_000329_030--Hb_009557_070 Hb_002774_060 Hb_002774_060 Hb_000329_030--Hb_002774_060 Hb_000656_040 Hb_000656_040 Hb_000329_030--Hb_000656_040 Hb_000045_090 Hb_000045_090 Hb_000329_030--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_000329_030--Hb_143398_010 Hb_000579_140 Hb_000579_140 Hb_000329_030--Hb_000579_140 Hb_015807_040 Hb_015807_040 Hb_000331_450--Hb_015807_040 Hb_010042_010 Hb_010042_010 Hb_000331_450--Hb_010042_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2935 11.0914 13.1692 30.693 38.3658 37.8243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2596 37.5182 27.3169 22.2101 9.85727

CAGE analysis