Hb_000579_140

Information

Type -
Description -
Location Contig579: 159403-162579
Sequence    

Annotation

kegg
ID rcu:RCOM_1595660
description hypothetical protein
nr
ID XP_002510436.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GZ79
description Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1
trembl
ID B9R7Z3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1595660 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein tic 20- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49781: 159451-162657 , PASA_asmbl_49782: 159979-160271 , PASA_asmbl_49783: 160936-161166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032208_090 0.0553655267 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
3 Hb_000329_030 0.0685127751 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
4 Hb_003092_040 0.0737119391 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
5 Hb_001818_090 0.0752093835 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000656_040 0.075960771 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
7 Hb_007416_280 0.0781333907 - - conserved hypothetical protein [Ricinus communis]
8 Hb_158467_010 0.0806612792 - - transporter, putative [Ricinus communis]
9 Hb_061090_010 0.0808558137 - - RAN BINDING protein 1 [Populus trichocarpa]
10 Hb_003615_010 0.082161128 - - 60S ribosomal protein L8, putative [Ricinus communis]
11 Hb_001009_270 0.0855231451 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
12 Hb_000175_460 0.0865247579 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_003126_050 0.0881173058 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
14 Hb_032264_110 0.0882161425 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
15 Hb_002774_060 0.0892903837 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
16 Hb_001758_100 0.0895153675 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
17 Hb_011344_210 0.0895520456 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
18 Hb_001575_090 0.091244125 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
19 Hb_007813_040 0.0915812772 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
20 Hb_004738_100 0.0920639053 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_000579_140 Hb_000579_140 Hb_032208_090 Hb_032208_090 Hb_000579_140--Hb_032208_090 Hb_000329_030 Hb_000329_030 Hb_000579_140--Hb_000329_030 Hb_003092_040 Hb_003092_040 Hb_000579_140--Hb_003092_040 Hb_001818_090 Hb_001818_090 Hb_000579_140--Hb_001818_090 Hb_000656_040 Hb_000656_040 Hb_000579_140--Hb_000656_040 Hb_007416_280 Hb_007416_280 Hb_000579_140--Hb_007416_280 Hb_001009_270 Hb_001009_270 Hb_032208_090--Hb_001009_270 Hb_000451_010 Hb_000451_010 Hb_032208_090--Hb_000451_010 Hb_032208_090--Hb_003092_040 Hb_011344_210 Hb_011344_210 Hb_032208_090--Hb_011344_210 Hb_000618_040 Hb_000618_040 Hb_032208_090--Hb_000618_040 Hb_009557_070 Hb_009557_070 Hb_000329_030--Hb_009557_070 Hb_002774_060 Hb_002774_060 Hb_000329_030--Hb_002774_060 Hb_000329_030--Hb_000656_040 Hb_000045_090 Hb_000045_090 Hb_000329_030--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_000329_030--Hb_143398_010 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_061090_010 Hb_061090_010 Hb_001818_090--Hb_061090_010 Hb_003032_040 Hb_003032_040 Hb_001818_090--Hb_003032_040 Hb_004109_090 Hb_004109_090 Hb_001818_090--Hb_004109_090 Hb_001818_090--Hb_005663_060 Hb_007441_120 Hb_007441_120 Hb_001818_090--Hb_007441_120 Hb_000656_040--Hb_002774_060 Hb_000656_040--Hb_032208_090 Hb_000656_040--Hb_000045_090 Hb_002998_060 Hb_002998_060 Hb_000656_040--Hb_002998_060 Hb_004032_150 Hb_004032_150 Hb_007416_280--Hb_004032_150 Hb_002026_180 Hb_002026_180 Hb_007416_280--Hb_002026_180 Hb_001489_150 Hb_001489_150 Hb_007416_280--Hb_001489_150 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_007416_280--Hb_000618_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.9804 11.7367 19.0563 19.0941 20.6994 29.1493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4943 31.6121 36.4041 20.6506 5.78144

CAGE analysis