Hb_000656_040

Information

Type -
Description -
Location Contig656: 22770-26823
Sequence    

Annotation

kegg
ID egr:104449410
description 25.3 kDa vesicle transport protein
nr
ID XP_012068842.1
description PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
swissprot
ID Q94AU2
description 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1
trembl
ID A0A067L845
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24664 PE=4 SV=1
Gene Ontology
ID GO:0005886
description kda vesicle transport protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52697: 22768-26628 , PASA_asmbl_52698: 25066-25295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_040 0.0 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
2 Hb_000329_030 0.0624609886 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
3 Hb_002774_060 0.0667818069 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
4 Hb_032208_090 0.0694720291 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
5 Hb_000579_140 0.075960771 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000045_090 0.0820306053 - - PREDICTED: syntaxin-31 [Jatropha curcas]
7 Hb_002998_060 0.0841510188 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
8 Hb_032264_110 0.0851056422 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
9 Hb_000019_030 0.0862388314 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
10 Hb_001009_270 0.0870077688 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
11 Hb_000451_010 0.0873559517 - - secretory carrier membrane protein, putative [Ricinus communis]
12 Hb_012799_160 0.0899896699 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
13 Hb_009557_070 0.0903048136 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011671_240 0.0904284833 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
15 Hb_013726_020 0.090864653 - - ara4-interacting protein, putative [Ricinus communis]
16 Hb_158467_010 0.0910159676 - - transporter, putative [Ricinus communis]
17 Hb_000618_040 0.0917806928 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
18 Hb_003206_070 0.0918821564 - - organic anion transporter, putative [Ricinus communis]
19 Hb_101705_030 0.0921899249 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
20 Hb_143398_010 0.0939738823 - - PREDICTED: peter Pan-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000656_040 Hb_000656_040 Hb_000329_030 Hb_000329_030 Hb_000656_040--Hb_000329_030 Hb_002774_060 Hb_002774_060 Hb_000656_040--Hb_002774_060 Hb_032208_090 Hb_032208_090 Hb_000656_040--Hb_032208_090 Hb_000579_140 Hb_000579_140 Hb_000656_040--Hb_000579_140 Hb_000045_090 Hb_000045_090 Hb_000656_040--Hb_000045_090 Hb_002998_060 Hb_002998_060 Hb_000656_040--Hb_002998_060 Hb_009557_070 Hb_009557_070 Hb_000329_030--Hb_009557_070 Hb_000329_030--Hb_002774_060 Hb_000329_030--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_000329_030--Hb_143398_010 Hb_000329_030--Hb_000579_140 Hb_002774_060--Hb_000045_090 Hb_004324_310 Hb_004324_310 Hb_002774_060--Hb_004324_310 Hb_010172_080 Hb_010172_080 Hb_002774_060--Hb_010172_080 Hb_002774_060--Hb_032208_090 Hb_001009_270 Hb_001009_270 Hb_032208_090--Hb_001009_270 Hb_032208_090--Hb_000579_140 Hb_000451_010 Hb_000451_010 Hb_032208_090--Hb_000451_010 Hb_003092_040 Hb_003092_040 Hb_032208_090--Hb_003092_040 Hb_011344_210 Hb_011344_210 Hb_032208_090--Hb_011344_210 Hb_000618_040 Hb_000618_040 Hb_032208_090--Hb_000618_040 Hb_000579_140--Hb_003092_040 Hb_001818_090 Hb_001818_090 Hb_000579_140--Hb_001818_090 Hb_007416_280 Hb_007416_280 Hb_000579_140--Hb_007416_280 Hb_000045_090--Hb_009557_070 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_000046_320 Hb_000046_320 Hb_002998_060--Hb_000046_320 Hb_003177_030 Hb_003177_030 Hb_002998_060--Hb_003177_030 Hb_000050_200 Hb_000050_200 Hb_002998_060--Hb_000050_200 Hb_000019_030 Hb_000019_030 Hb_002998_060--Hb_000019_030 Hb_000096_010 Hb_000096_010 Hb_002998_060--Hb_000096_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.1618 11.046 29.2904 40.3459 29.6496 52.8856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.2606 47.1284 52.5323 23.9161 12.5831

CAGE analysis