Hb_000050_200

Information

Type -
Description -
Location Contig50: 384899-387776
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11330g
description POPTRDRAFT_830270; integral membrane family protein
nr
ID NP_001295645.1
description ergosterol biosynthetic protein 28 [Jatropha curcas]
swissprot
ID O80594
description Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=2
trembl
ID D6BR64
description Putative uncharacterized protein OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0016021
description ergosterol biosynthetic protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45736: 385020-387782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_200 0.0 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
2 Hb_003994_230 0.0682064709 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
3 Hb_000200_020 0.0753800047 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
4 Hb_000468_060 0.0808643994 - - ku P70 DNA helicase, putative [Ricinus communis]
5 Hb_002681_100 0.0818853687 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
6 Hb_001575_090 0.0826510412 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
7 Hb_001828_150 0.0827803494 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
8 Hb_001318_280 0.0832838532 - - Protein FAM18B, putative [Ricinus communis]
9 Hb_001366_370 0.0840963697 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
10 Hb_001159_130 0.0841790932 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
11 Hb_000381_120 0.084381829 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
12 Hb_172632_100 0.0858396934 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
13 Hb_002998_060 0.0859840845 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
14 Hb_011628_060 0.086043952 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
15 Hb_014834_050 0.0866807681 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002169_040 0.0872342729 - - unknown [Populus trichocarpa]
17 Hb_031862_100 0.0881183968 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_026198_070 0.0894081095 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
19 Hb_000207_050 0.0897808818 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
20 Hb_000116_270 0.0904589034 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000050_200 Hb_000050_200 Hb_003994_230 Hb_003994_230 Hb_000050_200--Hb_003994_230 Hb_000200_020 Hb_000200_020 Hb_000050_200--Hb_000200_020 Hb_000468_060 Hb_000468_060 Hb_000050_200--Hb_000468_060 Hb_002681_100 Hb_002681_100 Hb_000050_200--Hb_002681_100 Hb_001575_090 Hb_001575_090 Hb_000050_200--Hb_001575_090 Hb_001828_150 Hb_001828_150 Hb_000050_200--Hb_001828_150 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_000720_040 Hb_000720_040 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_001366_370 Hb_001366_370 Hb_000200_020--Hb_001366_370 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_000783_010 Hb_000783_010 Hb_000200_020--Hb_000783_010 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_000019_030 Hb_000019_030 Hb_000468_060--Hb_000019_030 Hb_003226_140 Hb_003226_140 Hb_000468_060--Hb_003226_140 Hb_000468_060--Hb_001575_090 Hb_000768_090 Hb_000768_090 Hb_000468_060--Hb_000768_090 Hb_000035_180 Hb_000035_180 Hb_000468_060--Hb_000035_180 Hb_000120_670 Hb_000120_670 Hb_000468_060--Hb_000120_670 Hb_003057_060 Hb_003057_060 Hb_002681_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_002681_100--Hb_013575_010 Hb_004058_030 Hb_004058_030 Hb_002681_100--Hb_004058_030 Hb_002681_100--Hb_001511_060 Hb_003304_020 Hb_003304_020 Hb_002681_100--Hb_003304_020 Hb_006573_190 Hb_006573_190 Hb_002681_100--Hb_006573_190 Hb_001575_090--Hb_000019_030 Hb_001575_090--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_001575_090--Hb_011671_240 Hb_014834_050 Hb_014834_050 Hb_001575_090--Hb_014834_050 Hb_003918_010 Hb_003918_010 Hb_001575_090--Hb_003918_010 Hb_001828_150--Hb_001218_030 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_000853_150 Hb_000853_150 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0845 4.2914 11.8389 15.7786 12.1541 10.7504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.536 15.0801 15.8505 14.6814 7.56801

CAGE analysis