Hb_000468_060

Information

Type -
Description -
Location Contig468: 61467-80711
Sequence    

Annotation

kegg
ID rcu:RCOM_0534680
description ku P70 DNA helicase, putative
nr
ID XP_002521532.1
description ku P70 DNA helicase, putative [Ricinus communis]
swissprot
ID Q9FQ08
description ATP-dependent DNA helicase 2 subunit KU70 OS=Arabidopsis thaliana GN=KU70 PE=1 SV=1
trembl
ID B9S6B3
description Ku P70 DNA helicase, putative OS=Ricinus communis GN=RCOM_0534680 PE=4 SV=1
Gene Ontology
ID GO:0043564
description atp-dependent dna helicase 2 subunit ku70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44157: 44202-61764 , PASA_asmbl_44158: 59848-80648 , PASA_asmbl_44159: 59848-61670
cDNA
(Sanger)
(ID:Location)		 046_N03.ab1: 44215-61764 , 046_O04.ab1: 44215-61764

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000468_060 0.0 - - ku P70 DNA helicase, putative [Ricinus communis]
2 Hb_000019_030 0.0608699901 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
3 Hb_003226_140 0.0636427793 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_001575_090 0.0645715238 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
5 Hb_000768_090 0.0690965024 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
6 Hb_000035_180 0.074355492 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
7 Hb_000120_670 0.0756193309 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
8 Hb_001279_150 0.0756694501 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
9 Hb_001357_350 0.0788037023 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004070_020 0.0799105433 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
11 Hb_000417_130 0.0807295057 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
12 Hb_000050_200 0.0808643994 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
13 Hb_000215_110 0.0812889313 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
14 Hb_005489_060 0.0829378115 - - Anamorsin, putative [Ricinus communis]
15 Hb_000381_120 0.0830224582 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
16 Hb_168978_030 0.0832972781 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
17 Hb_005357_080 0.0835411557 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
18 Hb_001357_250 0.0850722896 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
19 Hb_023732_030 0.0852313127 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
20 Hb_026198_070 0.0852861864 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]

Gene co-expression network

sample Hb_000468_060 Hb_000468_060 Hb_000019_030 Hb_000019_030 Hb_000468_060--Hb_000019_030 Hb_003226_140 Hb_003226_140 Hb_000468_060--Hb_003226_140 Hb_001575_090 Hb_001575_090 Hb_000468_060--Hb_001575_090 Hb_000768_090 Hb_000768_090 Hb_000468_060--Hb_000768_090 Hb_000035_180 Hb_000035_180 Hb_000468_060--Hb_000035_180 Hb_000120_670 Hb_000120_670 Hb_000468_060--Hb_000120_670 Hb_005357_080 Hb_005357_080 Hb_000019_030--Hb_005357_080 Hb_000019_030--Hb_001575_090 Hb_000019_030--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000618_040 Hb_000618_040 Hb_000019_030--Hb_000618_040 Hb_002303_070 Hb_002303_070 Hb_003226_140--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_003226_140--Hb_000215_110 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_001599_040 Hb_001599_040 Hb_003226_140--Hb_001599_040 Hb_003226_140--Hb_005357_080 Hb_001575_090--Hb_000120_670 Hb_001575_090--Hb_011671_240 Hb_014834_050 Hb_014834_050 Hb_001575_090--Hb_014834_050 Hb_003918_010 Hb_003918_010 Hb_001575_090--Hb_003918_010 Hb_000317_240 Hb_000317_240 Hb_000768_090--Hb_000317_240 Hb_000039_220 Hb_000039_220 Hb_000768_090--Hb_000039_220 Hb_000684_380 Hb_000684_380 Hb_000768_090--Hb_000684_380 Hb_005054_350 Hb_005054_350 Hb_000768_090--Hb_005054_350 Hb_000768_090--Hb_000215_110 Hb_000146_070 Hb_000146_070 Hb_000035_180--Hb_000146_070 Hb_156279_020 Hb_156279_020 Hb_000035_180--Hb_156279_020 Hb_002078_350 Hb_002078_350 Hb_000035_180--Hb_002078_350 Hb_007479_040 Hb_007479_040 Hb_000035_180--Hb_007479_040 Hb_000340_180 Hb_000340_180 Hb_000035_180--Hb_000340_180 Hb_000331_260 Hb_000331_260 Hb_000035_180--Hb_000331_260 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2945 5.98698 13.0746 11.9784 10.7829 16.0562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6901 13.847 14.299 15.7704 7.20651

CAGE analysis