Hb_005357_080

Information

Type -
Description -
Location Contig5357: 59734-68912
Sequence    

Annotation

kegg
ID rcu:RCOM_0905770
description tyrosyl-DNA phosphodiesterase, putative
nr
ID XP_012091409.1
description PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
swissprot
ID Q8GUN6
description Chaperone protein dnaJ 50 OS=Arabidopsis thaliana GN=C50 PE=2 SV=1
trembl
ID A0A067JLC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21271 PE=4 SV=1
Gene Ontology
ID GO:0005634
description tyrosyl-dna phosphodiesterase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47549: 59778-63117 , PASA_asmbl_47550: 64006-69004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_080 0.0 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
2 Hb_000019_030 0.0477504394 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
3 Hb_000618_040 0.054950927 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
4 Hb_002303_070 0.0577632951 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
5 Hb_000215_110 0.0617884372 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
6 Hb_003665_060 0.0630163821 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
7 Hb_003226_140 0.0647633916 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
8 Hb_000230_560 0.0647928734 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
9 Hb_000580_180 0.065340462 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008748_040 0.0656988847 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
11 Hb_007416_280 0.0670328351 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003092_040 0.0685775217 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
13 Hb_001357_350 0.0691253743 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000120_670 0.0698980352 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
15 Hb_005144_160 0.0718136145 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
16 Hb_007691_030 0.0723083977 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
17 Hb_003126_050 0.073534696 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
18 Hb_000451_010 0.074407314 - - secretory carrier membrane protein, putative [Ricinus communis]
19 Hb_000808_280 0.0745471396 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003417_020 0.0753539862 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005357_080 Hb_005357_080 Hb_000019_030 Hb_000019_030 Hb_005357_080--Hb_000019_030 Hb_000618_040 Hb_000618_040 Hb_005357_080--Hb_000618_040 Hb_002303_070 Hb_002303_070 Hb_005357_080--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_005357_080--Hb_000215_110 Hb_003665_060 Hb_003665_060 Hb_005357_080--Hb_003665_060 Hb_003226_140 Hb_003226_140 Hb_005357_080--Hb_003226_140 Hb_001575_090 Hb_001575_090 Hb_000019_030--Hb_001575_090 Hb_000120_670 Hb_000120_670 Hb_000019_030--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_000019_030--Hb_011671_240 Hb_000468_060 Hb_000468_060 Hb_000019_030--Hb_000468_060 Hb_000019_030--Hb_000618_040 Hb_000451_010 Hb_000451_010 Hb_000618_040--Hb_000451_010 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_007416_280 Hb_007416_280 Hb_000618_040--Hb_007416_280 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560 Hb_002303_070--Hb_000215_110 Hb_002303_070--Hb_003226_140 Hb_001599_040 Hb_001599_040 Hb_002303_070--Hb_001599_040 Hb_005730_120 Hb_005730_120 Hb_002303_070--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_000010_330 Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_007317_110 Hb_007317_110 Hb_003665_060--Hb_007317_110 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_003226_140--Hb_000468_060 Hb_003226_140--Hb_001599_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6124 7.19255 11.1654 13.2847 12.1171 16.3049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5026 14.8281 13.5473 10.8194 7.48421

CAGE analysis