Hb_008511_130

Information

Type -
Description -
Location Contig8511: 115009-121701
Sequence    

Annotation

kegg
ID rcu:RCOM_1675140
description phenylalanyl-tRNA synthetase beta chain, putative
nr
ID XP_012070046.1
description PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
swissprot
ID Q9T034
description Probable phenylalanine--tRNA ligase alpha subunit OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3
trembl
ID A0A067LG44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10093 PE=3 SV=1
Gene Ontology
ID GO:0000049
description probable phenylalanine--trna ligase alpha subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60429: 114932-121653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_130 0.0 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
2 Hb_000141_250 0.0460381787 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
3 Hb_002997_080 0.0555363019 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
4 Hb_000230_560 0.0590977197 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
5 Hb_000390_170 0.0624410535 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
6 Hb_000618_040 0.0640669904 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
7 Hb_000094_300 0.0685896493 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
8 Hb_009545_080 0.0716579164 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
9 Hb_000883_020 0.0722399317 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
10 Hb_000212_330 0.0737939456 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_005357_080 0.0798967542 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
12 Hb_005288_150 0.0817936065 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
13 Hb_032986_010 0.0821931678 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
14 Hb_073171_040 0.0834277506 - - malic enzyme, putative [Ricinus communis]
15 Hb_000020_190 0.08373587 - - hypothetical protein RCOM_0452240 [Ricinus communis]
16 Hb_000808_050 0.0839734285 - - exonuclease, putative [Ricinus communis]
17 Hb_003813_040 0.0847695351 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
18 Hb_000053_130 0.0851161444 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
19 Hb_002197_020 0.0855017765 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
20 Hb_000260_100 0.0855137194 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008511_130 Hb_008511_130 Hb_000141_250 Hb_000141_250 Hb_008511_130--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_008511_130--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_008511_130--Hb_000230_560 Hb_000390_170 Hb_000390_170 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_000141_250--Hb_000230_560 Hb_005288_150 Hb_005288_150 Hb_000141_250--Hb_005288_150 Hb_000141_250--Hb_002997_080 Hb_000141_250--Hb_000390_170 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020 Hb_002997_080--Hb_000230_560 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_000883_020 Hb_000883_020 Hb_002997_080--Hb_000883_020 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_003665_060 Hb_003665_060 Hb_000230_560--Hb_003665_060 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000230_560--Hb_000883_020 Hb_000390_170--Hb_005288_150 Hb_003020_010 Hb_003020_010 Hb_000390_170--Hb_003020_010 Hb_006817_010 Hb_006817_010 Hb_000390_170--Hb_006817_010 Hb_002950_100 Hb_002950_100 Hb_000390_170--Hb_002950_100 Hb_000451_010 Hb_000451_010 Hb_000618_040--Hb_000451_010 Hb_005357_080 Hb_005357_080 Hb_000618_040--Hb_005357_080 Hb_007416_280 Hb_007416_280 Hb_000618_040--Hb_007416_280 Hb_000019_030 Hb_000019_030 Hb_000618_040--Hb_000019_030 Hb_000618_040--Hb_000230_560 Hb_000212_330 Hb_000212_330 Hb_000094_300--Hb_000212_330 Hb_009545_080 Hb_009545_080 Hb_000094_300--Hb_009545_080 Hb_000053_130 Hb_000053_130 Hb_000094_300--Hb_000053_130 Hb_000521_080 Hb_000521_080 Hb_000094_300--Hb_000521_080 Hb_000094_300--Hb_000141_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.1632 32.022 64.2427 48.4163 64.7895 68.8884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.0195 46.6684 68.282 34.3679 37.9822

CAGE analysis