Hb_002950_100

Information

Type desease resistance
Description Gene Name: AAA
Location Contig2950: 120530-131021
Sequence    

Annotation

kegg
ID gmx:100783650
description 26S protease regulatory subunit 6B homolog
nr
ID XP_012086544.1
description PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
swissprot
ID Q9SEI4
description 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1
trembl
ID A0A067JP57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24155 PE=3 SV=1
Gene Ontology
ID GO:0005618
description 26s protease regulatory subunit 6b homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30850: 120560-130980 , PASA_asmbl_30851: 120629-130980 , PASA_asmbl_30853: 124473-124591
cDNA
(Sanger)
(ID:Location)		 001_D16.ab1: 120985-130493 , 047_O02.ab1: 124656-130980

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002950_100 0.0 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
2 Hb_000521_320 0.0679863593 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
3 Hb_000302_270 0.0736029454 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
4 Hb_000010_400 0.0801959132 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
5 Hb_007813_040 0.0818543691 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
6 Hb_000031_060 0.0843025423 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
7 Hb_008246_040 0.0857038177 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
8 Hb_000185_070 0.0863934113 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008803_090 0.0883568755 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
10 Hb_000390_170 0.0895722515 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
11 Hb_000915_020 0.0909600394 - - unnamed protein product [Vitis vinifera]
12 Hb_003078_040 0.0909918248 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
13 Hb_025645_010 0.0911267766 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
14 Hb_004678_040 0.0917699002 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
15 Hb_000207_130 0.0938441024 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
16 Hb_000367_200 0.0939373512 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
17 Hb_000061_470 0.0942731233 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
18 Hb_003862_050 0.094350418 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
19 Hb_014497_050 0.0959035964 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
20 Hb_000442_150 0.0960510078 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]

Gene co-expression network

sample Hb_002950_100 Hb_002950_100 Hb_000521_320 Hb_000521_320 Hb_002950_100--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_002950_100--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_002950_100--Hb_000010_400 Hb_007813_040 Hb_007813_040 Hb_002950_100--Hb_007813_040 Hb_000031_060 Hb_000031_060 Hb_002950_100--Hb_000031_060 Hb_008246_040 Hb_008246_040 Hb_002950_100--Hb_008246_040 Hb_000521_320--Hb_000302_270 Hb_000521_320--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000521_320--Hb_004678_040 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000302_270--Hb_000010_400 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_000010_400--Hb_011995_010 Hb_000010_400--Hb_007813_040 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_003862_050 Hb_003862_050 Hb_007813_040--Hb_003862_050 Hb_002620_010 Hb_002620_010 Hb_007813_040--Hb_002620_010 Hb_000175_460 Hb_000175_460 Hb_007813_040--Hb_000175_460 Hb_000318_190 Hb_000318_190 Hb_007813_040--Hb_000318_190 Hb_000629_010 Hb_000629_010 Hb_007813_040--Hb_000629_010 Hb_000445_180 Hb_000445_180 Hb_000031_060--Hb_000445_180 Hb_011671_430 Hb_011671_430 Hb_000031_060--Hb_011671_430 Hb_000127_130 Hb_000127_130 Hb_000031_060--Hb_000127_130 Hb_000031_060--Hb_000521_320 Hb_000059_330 Hb_000059_330 Hb_000031_060--Hb_000059_330 Hb_003092_040 Hb_003092_040 Hb_000031_060--Hb_003092_040 Hb_000915_020 Hb_000915_020 Hb_008246_040--Hb_000915_020 Hb_000442_150 Hb_000442_150 Hb_008246_040--Hb_000442_150 Hb_000020_190 Hb_000020_190 Hb_008246_040--Hb_000020_190 Hb_014497_050 Hb_014497_050 Hb_008246_040--Hb_014497_050 Hb_002671_140 Hb_002671_140 Hb_008246_040--Hb_002671_140 Hb_008246_040--Hb_000185_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.126 83.0445 79.4365 58.888 87.9378 71.9689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.679 78.6665 104.846 62.3094 28.8245

CAGE analysis