Hb_008246_040

Information

Type transcription factor
Description TF Family: bZIP
Location Contig8246: 22472-26241
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12830g
description POPTRDRAFT_721835; hypothetical protein
nr
ID XP_012084427.1
description PREDICTED: transcription factor RF2a-like [Jatropha curcas]
swissprot
ID Q6S4P4
description Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=2
trembl
ID A0A067K743
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19634 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor rf2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59676: 22541-26057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008246_040 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
2 Hb_000915_020 0.0556480169 - - unnamed protein product [Vitis vinifera]
3 Hb_000442_150 0.0645999298 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
4 Hb_000020_190 0.0767157857 - - hypothetical protein RCOM_0452240 [Ricinus communis]
5 Hb_014497_050 0.0796294744 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
6 Hb_002671_140 0.0799580004 - - calcium-dependent protein kinase [Hevea brasiliensis]
7 Hb_000185_070 0.0806441869 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000630_050 0.0807156068 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000789_060 0.082375625 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
10 Hb_005539_220 0.0831823385 - - spermidine synthase 1, putative [Ricinus communis]
11 Hb_000345_380 0.0846479412 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
12 Hb_002078_020 0.085639205 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
13 Hb_002950_100 0.0857038177 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
14 Hb_000521_320 0.0858772405 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
15 Hb_000603_280 0.0873428934 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
16 Hb_000302_270 0.0877530619 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_001409_020 0.0880974896 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
18 Hb_007075_040 0.0883873899 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
19 Hb_000544_090 0.0896604456 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
20 Hb_000629_010 0.0906190503 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008246_040 Hb_008246_040 Hb_000915_020 Hb_000915_020 Hb_008246_040--Hb_000915_020 Hb_000442_150 Hb_000442_150 Hb_008246_040--Hb_000442_150 Hb_000020_190 Hb_000020_190 Hb_008246_040--Hb_000020_190 Hb_014497_050 Hb_014497_050 Hb_008246_040--Hb_014497_050 Hb_002671_140 Hb_002671_140 Hb_008246_040--Hb_002671_140 Hb_000185_070 Hb_000185_070 Hb_008246_040--Hb_000185_070 Hb_001409_020 Hb_001409_020 Hb_000915_020--Hb_001409_020 Hb_000915_020--Hb_014497_050 Hb_011671_430 Hb_011671_430 Hb_000915_020--Hb_011671_430 Hb_000308_030 Hb_000308_030 Hb_000915_020--Hb_000308_030 Hb_005993_050 Hb_005993_050 Hb_000915_020--Hb_005993_050 Hb_000442_150--Hb_002671_140 Hb_000982_060 Hb_000982_060 Hb_000442_150--Hb_000982_060 Hb_057878_010 Hb_057878_010 Hb_000442_150--Hb_057878_010 Hb_001135_130 Hb_001135_130 Hb_000442_150--Hb_001135_130 Hb_003893_030 Hb_003893_030 Hb_000442_150--Hb_003893_030 Hb_006922_100 Hb_006922_100 Hb_000020_190--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_000020_190--Hb_001124_160 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000020_190--Hb_000915_020 Hb_021409_040 Hb_021409_040 Hb_014497_050--Hb_021409_040 Hb_000366_120 Hb_000366_120 Hb_014497_050--Hb_000366_120 Hb_014497_050--Hb_011671_430 Hb_028285_010 Hb_028285_010 Hb_014497_050--Hb_028285_010 Hb_000030_190 Hb_000030_190 Hb_014497_050--Hb_000030_190 Hb_000562_090 Hb_000562_090 Hb_002671_140--Hb_000562_090 Hb_003609_030 Hb_003609_030 Hb_002671_140--Hb_003609_030 Hb_000661_290 Hb_000661_290 Hb_002671_140--Hb_000661_290 Hb_002671_140--Hb_057878_010 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_027428_010 Hb_027428_010 Hb_000185_070--Hb_027428_010 Hb_005337_090 Hb_005337_090 Hb_000185_070--Hb_005337_090 Hb_001981_030 Hb_001981_030 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_002872_030 Hb_002872_030 Hb_000185_070--Hb_002872_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.2817 19.5182 16.3299 17.3377 15.1175 25.2583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.595 15.1993 22.507 16.4232 9.27575

CAGE analysis