Hb_000302_270

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig302: 172504-180654
Sequence    

Annotation

kegg
ID rcu:RCOM_1582150
description DNA binding protein, putative
nr
ID XP_002513646.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8H0W3
description Protein REVEILLE 6 OS=Arabidopsis thaliana GN=RVE6 PE=2 SV=1
trembl
ID B9RIS7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1582150 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeodomain-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31801: 174362-179211 , PASA_asmbl_31802: 179423-180648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_270 0.0 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
2 Hb_000521_320 0.0454024096 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
3 Hb_000185_070 0.0608987378 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000771_120 0.0643416137 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
5 Hb_000010_400 0.0651542793 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
6 Hb_004678_040 0.0698990024 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
7 Hb_000789_060 0.0701165272 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
8 Hb_000403_050 0.0702520221 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
9 Hb_036790_100 0.072608726 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
10 Hb_004586_140 0.0726785664 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
11 Hb_002950_100 0.0736029454 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
12 Hb_025645_010 0.0759386456 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
13 Hb_012389_020 0.0763050597 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
14 Hb_000853_430 0.0773521591 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
15 Hb_000308_030 0.0778860335 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
16 Hb_000039_220 0.078666521 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
17 Hb_007813_040 0.0793387959 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
18 Hb_011995_010 0.0795359229 - - dc50, putative [Ricinus communis]
19 Hb_003078_040 0.0805238415 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
20 Hb_027428_010 0.0814152851 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000302_270 Hb_000302_270 Hb_000521_320 Hb_000521_320 Hb_000302_270--Hb_000521_320 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000010_400 Hb_000010_400 Hb_000302_270--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_000521_320--Hb_000010_400 Hb_000521_320--Hb_004678_040 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010 Hb_027428_010 Hb_027428_010 Hb_000185_070--Hb_027428_010 Hb_005337_090 Hb_005337_090 Hb_000185_070--Hb_005337_090 Hb_001981_030 Hb_001981_030 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_002872_030 Hb_002872_030 Hb_000185_070--Hb_002872_030 Hb_000771_120--Hb_025645_010 Hb_003747_200 Hb_003747_200 Hb_000771_120--Hb_003747_200 Hb_007477_070 Hb_007477_070 Hb_000771_120--Hb_007477_070 Hb_001404_100 Hb_001404_100 Hb_000771_120--Hb_001404_100 Hb_028995_040 Hb_028995_040 Hb_000771_120--Hb_028995_040 Hb_000010_400--Hb_011995_010 Hb_007813_040 Hb_007813_040 Hb_000010_400--Hb_007813_040 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000008_470 Hb_000008_470 Hb_004678_040--Hb_000008_470 Hb_000853_430 Hb_000853_430 Hb_004678_040--Hb_000853_430 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030 Hb_005539_220 Hb_005539_220 Hb_000789_060--Hb_005539_220 Hb_008246_040 Hb_008246_040 Hb_000789_060--Hb_008246_040 Hb_000403_050 Hb_000403_050 Hb_000789_060--Hb_000403_050 Hb_002671_140 Hb_002671_140 Hb_000789_060--Hb_002671_140 Hb_000789_060--Hb_000521_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.274 11.6585 13.3911 8.69005 10.361 12.8779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7475 15.6288 13.1343 8.75239 5.62869

CAGE analysis