Hb_000008_470

Information

Type -
Description -
Location Contig8: 553214-561499
Sequence    

Annotation

kegg
ID rcu:RCOM_0155030
description calcium/calmodulin-dependent protein kinase kinase, putative (EC:2.7.11.17)
nr
ID XP_002530292.1
description calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
swissprot
ID Q5HZ38
description Serine/threonine-protein kinase GRIK2 OS=Arabidopsis thaliana GN=GRIK2 PE=1 SV=1
trembl
ID B9SWC3
description Calcium/calmodulin-dependent protein kinase kinase, putative OS=Ricinus communis GN=RCOM_0155030 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase grik1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58719: 553503-561448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_470 0.0 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
2 Hb_004678_040 0.0617139966 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
3 Hb_001305_010 0.0668621578 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
4 Hb_004324_070 0.0689634528 - - protein phosphatase 2C [Hevea brasiliensis]
5 Hb_000175_460 0.072793611 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_000230_200 0.0757317633 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
7 Hb_000853_430 0.0762733561 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
8 Hb_000123_120 0.0803825496 - - actin depolymerizing factor 4 [Hevea brasiliensis]
9 Hb_003862_050 0.0847165919 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
10 Hb_000416_040 0.0862928548 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
11 Hb_007951_060 0.0871958577 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_001301_160 0.0925793432 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
13 Hb_025645_010 0.0927661169 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
14 Hb_000362_200 0.0936484196 - - exonuclease family protein [Populus trichocarpa]
15 Hb_001488_070 0.0937085122 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005539_350 0.0939973662 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000988_080 0.0945458065 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_003055_120 0.0963478878 - - Protein C20orf11, putative [Ricinus communis]
19 Hb_001662_070 0.0965291049 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
20 Hb_112798_030 0.0966559558 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000008_470 Hb_000008_470 Hb_004678_040 Hb_004678_040 Hb_000008_470--Hb_004678_040 Hb_001305_010 Hb_001305_010 Hb_000008_470--Hb_001305_010 Hb_004324_070 Hb_004324_070 Hb_000008_470--Hb_004324_070 Hb_000175_460 Hb_000175_460 Hb_000008_470--Hb_000175_460 Hb_000230_200 Hb_000230_200 Hb_000008_470--Hb_000230_200 Hb_000853_430 Hb_000853_430 Hb_000008_470--Hb_000853_430 Hb_000521_320 Hb_000521_320 Hb_004678_040--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_004678_040--Hb_000302_270 Hb_004678_040--Hb_000853_430 Hb_025645_010 Hb_025645_010 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030 Hb_007951_060 Hb_007951_060 Hb_001305_010--Hb_007951_060 Hb_006185_050 Hb_006185_050 Hb_001305_010--Hb_006185_050 Hb_003417_020 Hb_003417_020 Hb_001305_010--Hb_003417_020 Hb_002530_030 Hb_002530_030 Hb_001305_010--Hb_002530_030 Hb_000327_120 Hb_000327_120 Hb_001305_010--Hb_000327_120 Hb_001305_010--Hb_000853_430 Hb_003683_160 Hb_003683_160 Hb_004324_070--Hb_003683_160 Hb_000347_540 Hb_000347_540 Hb_004324_070--Hb_000347_540 Hb_112798_030 Hb_112798_030 Hb_004324_070--Hb_112798_030 Hb_006452_170 Hb_006452_170 Hb_004324_070--Hb_006452_170 Hb_000069_110 Hb_000069_110 Hb_004324_070--Hb_000069_110 Hb_003862_050 Hb_003862_050 Hb_000175_460--Hb_003862_050 Hb_002105_040 Hb_002105_040 Hb_000175_460--Hb_002105_040 Hb_000510_320 Hb_000510_320 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000876_070 Hb_000876_070 Hb_000175_460--Hb_000876_070 Hb_002968_060 Hb_002968_060 Hb_000230_200--Hb_002968_060 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_003001_120 Hb_003001_120 Hb_000230_200--Hb_003001_120 Hb_001269_680 Hb_001269_680 Hb_000230_200--Hb_001269_680 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000853_430--Hb_000302_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.559 19.6359 29.0967 21.577 28.9504 35.7008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8755 46.8285 48.5277 13.1882 14.1799

CAGE analysis