Hb_000347_540

Information

Type -
Description -
Location Contig347: 487756-490529
Sequence    

Annotation

kegg
ID rcu:RCOM_0652930
description protein binding protein, putative
nr
ID XP_002521334.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q1SF86
description Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1
trembl
ID B9S5R5
description Ubiquitin-like protein ATG12 OS=Ricinus communis GN=RCOM_0652930 PE=3 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin-like protein atg12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36254: 487933-490550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_540 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001579_030 0.0540087733 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
3 Hb_001662_070 0.0678106405 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
4 Hb_000815_320 0.075972256 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
5 Hb_000787_050 0.0774575889 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
6 Hb_004324_070 0.0832341807 - - protein phosphatase 2C [Hevea brasiliensis]
7 Hb_025645_010 0.086103439 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
8 Hb_000768_170 0.0882343195 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
9 Hb_003057_090 0.0908090396 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
10 Hb_001481_170 0.0935361998 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002685_040 0.0940007352 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
12 Hb_013726_020 0.0951879328 - - ara4-interacting protein, putative [Ricinus communis]
13 Hb_118419_010 0.0958551706 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_000008_470 0.0967734871 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
15 Hb_003020_020 0.097167618 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
16 Hb_002835_240 0.0979128074 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
17 Hb_000403_060 0.098419279 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
18 Hb_000141_040 0.0987303567 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
19 Hb_004678_040 0.098733838 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
20 Hb_008847_040 0.0991753538 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000347_540 Hb_000347_540 Hb_001579_030 Hb_001579_030 Hb_000347_540--Hb_001579_030 Hb_001662_070 Hb_001662_070 Hb_000347_540--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_000347_540--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_000347_540--Hb_000787_050 Hb_004324_070 Hb_004324_070 Hb_000347_540--Hb_004324_070 Hb_025645_010 Hb_025645_010 Hb_000347_540--Hb_025645_010 Hb_001579_030--Hb_025645_010 Hb_001579_030--Hb_001662_070 Hb_001579_030--Hb_000815_320 Hb_001579_030--Hb_000787_050 Hb_000403_060 Hb_000403_060 Hb_001579_030--Hb_000403_060 Hb_001662_070--Hb_025645_010 Hb_001662_070--Hb_000815_320 Hb_001662_070--Hb_000787_050 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_002835_240 Hb_002835_240 Hb_000787_050--Hb_002835_240 Hb_000787_050--Hb_025645_010 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_003683_160 Hb_003683_160 Hb_004324_070--Hb_003683_160 Hb_000008_470 Hb_000008_470 Hb_004324_070--Hb_000008_470 Hb_112798_030 Hb_112798_030 Hb_004324_070--Hb_112798_030 Hb_006452_170 Hb_006452_170 Hb_004324_070--Hb_006452_170 Hb_000069_110 Hb_000069_110 Hb_004324_070--Hb_000069_110 Hb_000771_120 Hb_000771_120 Hb_025645_010--Hb_000771_120 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8518 7.13688 17.3625 18.946 21.1159 15.1618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3254 28.4714 23.899 6.97073 8.56488

CAGE analysis