Hb_165132_010

Information

Type -
Description -
Location Contig165132: 1381-3219
Sequence    

Annotation

kegg
ID cmo:103490330
description uncharacterized LOC103490330
nr
ID XP_011037235.1
description PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A0A0K2E7
description Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007920 PE=4 SV=1
Gene Ontology
ID GO:0000276
description atp synthase e chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15219: 1377-3195
cDNA
(Sanger)
(ID:Location)		 027_C04.ab1: 1381-3135 , 041_B17.ab1: 1381-3135

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165132_010 0.0 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
2 Hb_134949_020 0.0593258869 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
3 Hb_001662_070 0.0652613499 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
4 Hb_002874_190 0.0675170702 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
5 Hb_033594_110 0.0679992912 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
6 Hb_002518_050 0.0680143245 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
7 Hb_002864_050 0.0684832544 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
8 Hb_003687_110 0.0686934667 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
9 Hb_007778_030 0.0691635603 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_145880_030 0.0693820596 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
11 Hb_004931_090 0.0701381435 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
12 Hb_000840_030 0.071076321 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
13 Hb_001279_310 0.072108554 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
14 Hb_001314_100 0.0728915496 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
15 Hb_010407_040 0.0746909211 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
16 Hb_001269_680 0.0760006063 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
17 Hb_000201_120 0.0774093828 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
18 Hb_000815_320 0.078926083 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
19 Hb_001328_040 0.0795190904 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
20 Hb_004453_170 0.0798544948 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]

Gene co-expression network

sample Hb_165132_010 Hb_165132_010 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_001341_090 Hb_001341_090 Hb_134949_020--Hb_001341_090 Hb_134949_020--Hb_033594_110 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_134949_020--Hb_002864_050 Hb_001314_100 Hb_001314_100 Hb_134949_020--Hb_001314_100 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_005539_350 Hb_005539_350 Hb_002874_190--Hb_005539_350 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_006541_030 Hb_006541_030 Hb_002874_190--Hb_006541_030 Hb_000840_030 Hb_000840_030 Hb_002874_190--Hb_000840_030 Hb_000630_060 Hb_000630_060 Hb_033594_110--Hb_000630_060 Hb_003126_090 Hb_003126_090 Hb_033594_110--Hb_003126_090 Hb_145880_030 Hb_145880_030 Hb_033594_110--Hb_145880_030 Hb_001016_030 Hb_001016_030 Hb_033594_110--Hb_001016_030 Hb_000510_110 Hb_000510_110 Hb_002518_050--Hb_000510_110 Hb_012573_070 Hb_012573_070 Hb_002518_050--Hb_012573_070 Hb_003018_120 Hb_003018_120 Hb_002518_050--Hb_003018_120 Hb_000970_010 Hb_000970_010 Hb_002518_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_002518_050--Hb_001818_020 Hb_000029_200 Hb_000029_200 Hb_002864_050--Hb_000029_200 Hb_002830_020 Hb_002830_020 Hb_002864_050--Hb_002830_020 Hb_007416_030 Hb_007416_030 Hb_002864_050--Hb_007416_030 Hb_101705_030 Hb_101705_030 Hb_002864_050--Hb_101705_030 Hb_002864_050--Hb_002874_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.441 40.2297 77.0384 71.4587 81.1515 104.329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.412 202.334 110.013 36.5466 35.4186

CAGE analysis