Hb_000970_010

Information

Type -
Description -
Location Contig970: 19239-19679
Sequence    

Annotation

kegg
ID cic:CICLE_v10026719mg
description hypothetical protein
nr
ID XP_012079404.1
description PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
swissprot
ID P51414
description 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2
trembl
ID A0A067KAN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12534 PE=3 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l26-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63938: 19149-19882
cDNA
(Sanger)
(ID:Location)		 001_G18.ab1: 19149-19882 , 021_B12.ab1: 19183-19881 , 034_F11.ab1: 19149-19697 , 043_I23.ab1: 19183-19881 , 052_E06.ab1: 19166-19857

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000970_010 0.0 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
2 Hb_001818_020 0.0486612389 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
3 Hb_008173_090 0.0622820201 - - glutathione peroxidase, putative [Ricinus communis]
4 Hb_023732_070 0.0663642584 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
5 Hb_002518_050 0.0716000081 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
6 Hb_001584_070 0.0716216248 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000545_150 0.0726091354 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
8 Hb_001235_190 0.0734558027 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
9 Hb_000134_330 0.0749844524 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
10 Hb_002182_060 0.0751491153 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
11 Hb_007741_050 0.0751507262 - - vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_001540_010 0.0751698281 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
13 Hb_001269_270 0.0754511709 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_000025_530 0.0756079835 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
15 Hb_000099_060 0.0756971322 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
16 Hb_000200_100 0.0758192442 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
17 Hb_000465_060 0.0779978696 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
18 Hb_002296_060 0.0785238047 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
19 Hb_001638_260 0.078824067 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
20 Hb_007101_150 0.0805650061 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]

Gene co-expression network

sample Hb_000970_010 Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_000970_010--Hb_001818_020 Hb_008173_090 Hb_008173_090 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260 Hb_001235_190 Hb_001235_190 Hb_008173_090--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_001824_070 Hb_001824_070 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_023732_070--Hb_001584_070 Hb_000510_110 Hb_000510_110 Hb_002518_050--Hb_000510_110 Hb_012573_070 Hb_012573_070 Hb_002518_050--Hb_012573_070 Hb_003018_120 Hb_003018_120 Hb_002518_050--Hb_003018_120 Hb_165132_010 Hb_165132_010 Hb_002518_050--Hb_165132_010 Hb_002518_050--Hb_001818_020 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_000545_150--Hb_012573_070 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_000545_150--Hb_001638_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
444.621 150.583 127.944 140.45 307.503 361.56
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
545.175 918.762 360.827 185.971 86.8721

CAGE analysis