Hb_001383_060

Information

Type -
Description -
Location Contig1383: 87166-89828
Sequence    

Annotation

kegg
ID brp:103864746
description calmodulin-7-like
nr
ID XP_003632230.1
description PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
swissprot
ID P62201
description Calmodulin OS=Lilium longiflorum PE=2 SV=2
trembl
ID G3MHB1
description Putative uncharacterized protein (Fragment) OS=Amblyomma maculatum PE=2 SV=1
Gene Ontology
ID GO:0005829
description calmodulin-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10522: 87150-89821 , PASA_asmbl_10523: 87241-88280 , PASA_asmbl_10524: 89174-89663 , PASA_asmbl_10525: 85336-89672
cDNA
(Sanger)
(ID:Location)		 008_N03.ab1: 87431-89680 , 010_D11.ab1: 87430-89684 , 011_F02.ab1: 87242-89679 , 014_D19.ab1: 87324-89679 , 016_J23.ab1: 87316-89683 , 017_D16.ab1: 87404-89683 , 022_J22.ab1: 87324-89633 , 023_H20.ab1: 87339-89683 , 024_D22.ab1: 87540-89821 , 026_P16.ab1: 87500-89821 , 027_J16.ab1: 87336-89666 , 029_D14.ab1: 87345-89678 , 032_M09.ab1: 87345-89663 , 037_H15.ab1: 87310-89679 , 037_P14.ab1: 87316-89679 , 038_P01.ab1: 87319-89666 , 040_E23.ab1: 87319-89683 , 044_E11.ab1: 87309-89679 , 045_J23.ab1: 87253-89678 , 048_E11.ab1: 87287-89666 , 049_C12.ab1: 87415-89683

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001383_060 0.0 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
2 Hb_003927_130 0.0406550107 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
3 Hb_001433_050 0.0583100896 - - 60S ribosomal protein L18, putative [Ricinus communis]
4 Hb_001584_070 0.0619919277 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000340_140 0.0631378495 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
6 Hb_007479_020 0.0655249944 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
7 Hb_000120_750 0.0667920987 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
8 Hb_000465_060 0.0668610637 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
9 Hb_004837_140 0.0693424655 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
10 Hb_000086_070 0.071911901 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
11 Hb_000170_010 0.0743371324 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_002963_010 0.0744528926 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
13 Hb_000085_320 0.0746676071 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
14 Hb_008173_090 0.076892078 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_000317_340 0.0769899873 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000545_150 0.0771363424 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
17 Hb_000444_050 0.0785554752 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
18 Hb_005997_010 0.0787910021 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
19 Hb_000329_310 0.07924581 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
20 Hb_012515_010 0.0801649475 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001383_060 Hb_001383_060 Hb_003927_130 Hb_003927_130 Hb_001383_060--Hb_003927_130 Hb_001433_050 Hb_001433_050 Hb_001383_060--Hb_001433_050 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_007479_020 Hb_007479_020 Hb_001383_060--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_001383_060--Hb_000120_750 Hb_000086_070 Hb_000086_070 Hb_003927_130--Hb_000086_070 Hb_001829_060 Hb_001829_060 Hb_003927_130--Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_003927_130--Hb_001109_020 Hb_003927_130--Hb_001433_050 Hb_000883_050 Hb_000883_050 Hb_003927_130--Hb_000883_050 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010 Hb_000465_060 Hb_000465_060 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_002963_010 Hb_002963_010 Hb_000340_140--Hb_002963_010 Hb_000086_550 Hb_000086_550 Hb_000340_140--Hb_000086_550 Hb_000170_010 Hb_000170_010 Hb_000340_140--Hb_000170_010 Hb_000283_110 Hb_000283_110 Hb_000340_140--Hb_000283_110 Hb_000221_150 Hb_000221_150 Hb_000340_140--Hb_000221_150 Hb_001722_100 Hb_001722_100 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_007479_020--Hb_000120_750 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
630.314 256.666 280.445 347.3 677.607 978.944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1402.26 1761.76 971.484 389.602 193.971

CAGE analysis